Query= MSMg01no082_e24.b1 MSMg01no082_e24.b1 CHROMAT_FILE:
MSMg01no082_e24.b1 PHD_FILE: MSMg01no082_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:45 2005
(434 letters)
>mm_chr5_92509169_92510002
Length = 834
Score = 472 bits (244), Expect = e-137
Identities = 279/292 (95%), Gaps = 7/292 (2%)
Strand = Plus / Minus
Query: 3 ggaattctaagtatca--ttcccatttttctgtaaatgaagttaacatcttccttattca 60
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggaattctaagtatcagttt--catttttctgtaaatgaagttaacatcttccttattca 258
Query: 61 aggaggtaaaagaaacacaggatactcgttaaactttaaaatgtaatgttagggtgggca 120
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 257 aggaggtaaaagaaacagaggatactcattaaactttaaaatgtaatgttagggtgggca 198
Query: 121 tggttgcatatgcctgtaatctcagaggcagtggagggcaggctggtcctatagagggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tggttgcatatgcctgtaatctcagaggcagtggagggcaggctggtcctatagagggaa 138
Query: 181 ttccagaacagccagggctacacagagagaccttgtttcagaaggggcagcacataatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttccagaacagccagggctacacagagagaccttgtttcagaaggggcagcacataatta 78
Query: 241 atttttctttctttctttctttc-tttctttctttctttctttctttctttc 291
||||||||||||||||||||||| ||| ||| ||| ||| ||| ||| ||||
Sbjct: 77 atttttctttctttctttctttccttttttttttttttttttt-ttt-tttc 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_e24.g1 MSMg01no082_e24.g1 CHROMAT_FILE:
MSMg01no082_e24.g1 PHD_FILE: MSMg01no082_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:45 2005
(189 letters)
>mm_chr5_92371318_92371906
Length = 589
Score = 344 bits (178), Expect = 2e-99
Identities = 184/186 (98%)
Strand = Plus / Plus
Query: 1 acatcagtttggtactattcttcctacattctgctttggccgctccacaaacatgtactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatcagtttggtactattcttcctacattctgctttggccgctccacaaacatgtactg 260
Query: 61 gtcaaacaagagccattctgtcagttacgaatcctattttgcttgttttagttgggctct 120
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gccaaacaagagccattctgtcagttacaaatcctattttgcttgttttagttgggctct 320
Query: 121 agttgtctgcttcattgttttttgttttgctgttgggttttggttggttggttggttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttgtctgcttcattgttttttgttttgctgttgggttttggttggttggttggttggt 380
Query: 181 tggttg 186
||||||
Sbjct: 381 tggttg 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space: 105161
Effective search space used: 105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
