Query= MSMg01no082_i19.b1 MSMg01no082_i19.b1 CHROMAT_FILE:
MSMg01no082_i19.b1 PHD_FILE: MSMg01no082_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:02 2005
(198 letters)
>mm_chr5_104567642_104568239
Length = 598
Score = 325 bits (168), Expect = 1e-93
Identities = 189/196 (96%)
Strand = Plus / Plus
Query: 3 agctaccttttaattaaccaatttaaaaattacctatgtatttgcccttgtgagggtatg 62
||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 203 agctaacttttaattaaccaattaaaaaattacctatgtatttgtccgtgtgagggtatg 262
Query: 63 atgcatgtatgggctcatgtttgtaagtgcatgtgcgcatgtgcacatatggctgctaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgcatgtatgggctcatgtttgtaagtgcatgtgcgcatgtgcacatatggctgctaca 322
Query: 123 taaatggaagatataattgatgaccctaaagagttggatgctcttcttattagcgcgaag 182
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 323 taaatggaagatataattgatgaccgtaaagagttggatgctcttcttattagcgtaaag 382
Query: 183 gcaaacaccatctcac 198
||||||||||||||||
Sbjct: 383 gcaaacaccatctcac 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space: 112100
Effective search space used: 112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no082_i19.g1 MSMg01no082_i19.g1 CHROMAT_FILE:
MSMg01no082_i19.g1 PHD_FILE: MSMg01no082_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:02 2005
(449 letters)
>mm_chr5_104684737_104685586
Length = 850
Score = 824 bits (426), Expect = 0.0
Identities = 443/450 (98%), Gaps = 5/450 (1%)
Strand = Plus / Minus
Query: 1 ttcaggccatatcccccttgaggcactctgcataaatggcagcccagtcaaaagagaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttcaggccatatcccccttgaggcactctgcataaatggcagcccagtcaaaagagaatg 433
Query: 61 aaagccgactggttggtaggcttccatgtgctgacattactagagattttaaaaggcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaagccgactggttggtaggcttccatgtgctgacattactagagattttaaaaggcaca 373
Query: 121 gtgtcttgtggatcttacttactagctataaagac-caataataatcagaataattaata 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 372 gtgtcttgtggatcttacttactagctataaagacacaataataatcagaataattaata 313
Query: 180 atcagaagagtcaaaatagttggatggtctgctaaacacacagaacaaaagaacatgcca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 312 atcagaagagtcaaaatagttggatggtctgctaaacacacagaacaaaagaacatgtca 253
Query: 240 attatagctttgaatctgccagcctttgcattcatgttagaaatgcagctacagccgggg 299
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 252 attatagctttgaatctgccagcctttgcattcacgttagaaatgcagctacagcc-ggg 194
Query: 300 cgttggtggcacatgcctttaatcccagcactcgggaggcagaggcaggaggatttctga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cgttggtggcacatgcctttaatcccagcactcgggaggcagaggcaggaggatttctga 134
Query: 360 gttctaggccagcctggtctacagagtgagttccaggacagccagagctgcagagaaacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gttctaggccagcctggtctacagagtgagttccaggacagccagagctgcagagaaacc 74
Query: 420 ctgcctcagggaaaaaaaaataaaagaaat 449
|||||||||||||||||| |||||||||
Sbjct: 73 ctgcctcagggaaaaaaa---aaaagaaat 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 850
Length adjustment: 10
Effective length of query: 439
Effective length of database: 840
Effective search space: 368760
Effective search space used: 368760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
