BAC Information

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BAC

Clone NameMSMg01-082J05
Chromosome5 (Build37)
Map Location 51,045,392 - 51,045,799
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666223, Gpr125, EG637307
Downstream geneLOC100041015, LOC242987, EG624734, LOC666265, LOC100041059, Ppargc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082J05.T7 (MSMg01no082_j05.b1)MSMg01-082J05.TJ (MSMg01no082_j05.g1)
ACCAG302911AG302912
length6961,658
length of high quality
(start - end)
410 (45 - 454)---
definitionCHROMAT_FILE: MSMg01no082_j05.b1 PHD_FILE: MSMg01no082_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:04 2005CHROMAT_FILE: MSMg01no082_j05.g1 PHD_FILE: MSMg01no082_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGAGCCGCGGAA
TTCATTTATAACTTCAAGATGAAAAGCAACATAAAATGGAGGTGACTAAT
GCGATAGAGAGGAAAGCTGGGGATGGAAGAGCTAGGTCTAAATGCGAAGC
CCATTTCACTCATTGGGAATTATTTATTGCACTTCTATGCACCGAACTGC
TATATGCCAGGTATAAAAATGAGTAACATGGTCTTTGTCCTGTAGGAACT
CAGTCTTCTGGAGCAAATAGATAACCTTATTACAATTTACAAATGCTTAT
CTTAGTCATTTGTACTGTAAATACAGTGCAGTACAGCAATAAAGAACACT
AACTCACAAGCTGGACCACCTGAGTTTAAATTCTTCTCAGAAATTAATGG
ATGTATGATGTTGCGTAATATGCAAGTGTTACTGACCTGAATTTGTCATA
AGATAGAGATGTAGGATTGGCTTTCATACTACTGTGAGAATTCAATGTGT
TGAATATGGCAAACACATGTAAATAATTTTGAAGCATAGAAAGGAAGTTG
CTGCTTCTGATCCTTTTGTTACAATCATCACCACCACCATCCTAATCATA
GTCTTAGTTTTAGTGCTGTGATAACCCACCATTAGAAAGACAGCTCTTAT
AAAAGAAAGCATTTAATTGTGGCCTTGCTTACCGATTTATAGGCTG
TTGACGTATTCCGTGTCCTTCTTCTGCGTCGGCTATGTGTTCCGTGCGCT
GGCTCACGACACGTAACACTATCTGAGACGCACGAAGAACATTAATATAA
NTAATAGATACTCCTATTCAGATCACATACTCACTCAGCCTAATAATATA
TACAACACTCAATATAATAGAAATATATCCAACAGGCGTGCAGGAGGCAG
CGCAATGCGATGACATAATAGCGCTACCGAGCATAATGAGCGCTGCACGG
ACTATCTAGTTTATCTACTCACTAATAACTACTCTCTGCTGTATTCTACA
CTTCGCACATTCATGTACGCACATCTTATGATTTCCGCCGTCATATCATG
TAGTCACTCNCGCACGCCACGGTTATATCACTCACGTAACGCGATGGANG
CACGATACGCCACGGAAACCTTTGCTGGTATAACACCTATGTCATATTAT
GNTAGGCACCGCTACGCACGTAACGCTAATGTCTCACACTGCGTNCTGCT
CGTTCGACTACTGTGCGGTCATCTACGGANTGCGAATGCGATAATCGACG
TGTTATCATATCGTACTTAGTGTACCGTGACAGTGCGTATGTAGGATCGC
ANCGCGTAGTGTAAGTCATATACTGCCGCTAGTAAGCACTATGTGCGTCT
ATGTNGCTTACACCATCATCGCGTCGACTCTCTCCACAGCCGGCGTATAC
TGCTGCTGAATATGTCTTTGTCCGCGTTNATCGCACGTCTACATACTTCG
TCGCNGTCTACTTCATTCGCTTTTACTCNCGTACCNCNCTACCATCACAT
TGTCAGTTAATCGTTATCTGCGCACCTATACGCAGACGCGACGATAAGCA
TGTGTATACTANTGTTATGCGACGTAGCTACAATCAACATATACGTGAGT
ATTCGTATCGCGTACTTATCGTTTTTTATGCGCGCGCGTGCGCCACACTA
CAGTTATATCTCGCGATTATCGTATATAGTGATATTACAACGCGTCTGCC
TATATACATGCTCGTATCTACTATACTCTATATCTCTTTATCATTTGCAC
TGTCGCTCACATTATGAATCGCCGAATACCTAATACAGACTGCTACTTAT
ATCCTGTATGCATATCAACACTACGATCGCTATATATATAATACACGTGC
CGTTGTGGCATAACCGACATCTATGCGCTAGTACCTGCCGCGACGTAGAA
TAATATATACTACACGCCATAGTCTCATATGCACATGTAGAGCATCCACA
CATAGTCGTACGTCTATGCTCGCTTATCGCCGATGTCTCAGCTATTCATA
TTCGCACGACACTCTCACACCGCCATCTATACTCCTCTCGNCGTCAATTT
ACATGCGCCACTAGTATATGTCATATCACTNGCTCTGCCGCACTATGTAA
TACGTCACGCACACTCGTTTCACAGTATCGANCATATNGATAATTGTTAC
GATTGTCGCCTCCGGTGACTACACCTTGTCCGACTGACTCNGCGAGTATC
GCAGATATGTCCGTATAATAATTAATGATCTATCTGATATCACAATNTCG
CATCTANTCATCCCNTCCTCGCGTTCTATAACTATCGCCACGAGTGTATA
TTACGCTGCTNTCGTCTATTNATATGCGCGCCTGCTCTTTATTTNGATGG
TCCGTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_j05.b1 MSMg01no082_j05.b1 CHROMAT_FILE:
MSMg01no082_j05.b1 PHD_FILE: MSMg01no082_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:04 2005
         (410 letters)



>mm_chr5_51045322_51046131
          Length = 810

 Score =  758 bits (392), Expect = 0.0
 Identities = 404/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcatttataacttcaagatgaaaagcaacataaaatggaggtgactaatgcgata 62
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggaattcatttataacaggaagatgaaaagcaacataaaatggaggtgactaatgcgata 419

                                                                       
Query: 63  gagaggaaagctggggatggaagagctaggtctaaatgcgaagcccatttcactcattgg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gagaggaaagctggggatggaagagctaggtctaaatgcgaagcccatttcactcattgg 359

                                                                       
Query: 123 gaattatttattgcacttctatgcaccgaactgctatatgccaggtataaaaatgagtaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaattatttattgcacttctatgcaccgaactgctatatgccaggtataaaaatgagtaa 299

                                                                       
Query: 183 catggtctttgtcctgtaggaactcagtcttctggagcaaatagataaccttattacaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 catggtctttgtcctgtaggaactcagtcttctggagcaaatagataaccttattacaat 239

                                                                       
Query: 243 ttacaaatgcttatcttagtcatttgtactgtaaatacagtgcagtacagcaataaagaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ttacaaatgcttatcttagtcatttgtactgtaaatacagtgcagtacagcaataaagaa 179

                                                                       
Query: 303 cactaactcacaagctggaccacctgagtttaaattcttctcagaaattaatggatgtat 362
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 cactaactcacaagctgaaccacctgagtttaaattcttctcagaaattaatggatgtat 119

                                                           
Query: 363 gatgttgcgtaatatgcaagtgttactgacctgaatttgtcataagat 410
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gatgttgcgtaatatgcaagtgttactgacctgaatttgtcataagat 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)