Query= MSMg01no083_f05.b1 MSMg01no083_f05.b1 CHROMAT_FILE:
MSMg01no083_f05.b1 PHD_FILE: MSMg01no083_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:01 2005
(615 letters)
>mm_chr5_45512119_45513129
Length = 1011
Score = 1035 bits (535), Expect = 0.0
Identities = 591/611 (96%), Gaps = 4/611 (0%)
Strand = Plus / Plus
Query: 5 gaattctttcagaagcacctctgccatgattccagggcattttttttccataagctatga 64
|||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||
Sbjct: 205 gaattctttcagaagcccctctgccatgattccagggca-tttttttcgataagctgtga 263
Query: 65 tggtaaatattgaaatgccttattttctcccctcatctttgttcagtgatatctagttag 124
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 tagtaaatattgaaatgccttattttctcccctcatctttgttcagtgacatctagttag 323
Query: 125 aacaactgtgtgctgatgtagatgctaagctcataattaacattattgtcaaataaaaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacaactgtgtgctgatgtagatgctaagctcataattaacattattgtcaaataaaaac 383
Query: 185 acaataaaatctgattcattaacaccattgatgtggtgtatgtactatgtgtcaaatgct 244
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 acaataaaatctgattcataaacaccattgatgtgatgtatgtactatgtgtcaaatgct 443
Query: 245 gtcactgaagcctctatacagttttcacttaattctacaacaatccaggaaaatcatgct 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 gtcactgaagcctctatacagttttcgcttaattctacaacaatccaggaaaatcatgct 503
Query: 305 ccaaattgcactggtctatcccatcttccaaatccatgcaacagaataaataaacacact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaaattgcactggtctatcccatcttccaaatccatgcaacagaataaataaacacact 563
Query: 365 aaactaaaagcaatatacaatgcttgatgatcaactgaagagtcactttggcattattac 424
|||||||||||| |||| |||||||||||||||||||||||||||||||| |||| | |
Sbjct: 564 gaactaaaagcaacataccatgcttgatgatcaactgaagagtcactttggaattaatgc 623
Query: 425 catgtagcaattgaatagcaaagaagagtaaaggtaagctgagagaagggagggccaaag 484
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 624 catgtagcaattgaatagcaaagac---taaaggtaagctgagagaagcgagggccaaag 680
Query: 485 aagtaacgaggtaggagagtgtgagctggaatcggaggtcagaaagctgctatatagagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtaacgaggtaggagagtgtgagctggaatcggaggtcagaaagctgctatatagagt 740
Query: 545 tgaagagggattctggagttgcaaagacaaatatacagaacccagagtcagcagggtgac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgaagagggattctggagttgcaaagacaaatatacagaacccagagtcagcagggtgac 800
Query: 605 agttttcagat 615
|||||||||||
Sbjct: 801 agttttcagat 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1011
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1001
Effective search space: 605605
Effective search space used: 605605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_f05.g1 MSMg01no083_f05.g1 CHROMAT_FILE:
MSMg01no083_f05.g1 PHD_FILE: MSMg01no083_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:01 2005
(339 letters)
>mm_chr5_45669017_45669757
Length = 741
Score = 625 bits (323), Expect = 0.0
Identities = 336/341 (98%), Gaps = 2/341 (0%)
Strand = Plus / Minus
Query: 1 gaatcatcaaaggc--agagcattgaattcccacggaagcccgctgagtagggggttttc 58
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaatcatcaaaggcagagagcattgaattcccacggaagcccgctgagtagggggttttc 482
Query: 59 ctgatgagctctgctgatgaggaaaatgtagtggagaaagacgcaaaagtcccagtggaa 118
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 481 ctgatgagctctgctgatgaggaaaatgtagcggagaaagacgcaaaagtcccagtggaa 422
Query: 119 tccagtgagggatcacctagcaagaaataaacaaaagagggccaagcgtctttgcacatg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 421 tccagtgagggatcacctagcaagaaataaacaaaagagggccaagcgtctttgcacttg 362
Query: 179 gagctgacaagctccgcataatgtaaccctgtccagaagagcagtaccctgctcagagca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagctgacaagctccgcataatgtaaccctgtccagaagagcagtaccctgctcagagca 302
Query: 239 tgagaatagctttctgcagtgctgtgtaaacagtctttttcactagccttcctggctgct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgagaatagctttctgcagtgctgtgtaaacagtctttttcactagccttcctggctgct 242
Query: 299 aaactgggagaagcttaagtggagaaggaggaggaggagga 339
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 aaactgggagaagcttaagtggaggaggaggaggaggagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 741
Length adjustment: 9
Effective length of query: 330
Effective length of database: 732
Effective search space: 241560
Effective search space used: 241560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
