BAC Information

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BAC

Clone NameMSMg01-083K10
Chromosome5 (Build37)
Map Location 83,918,133 - 83,918,457
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083K10.T7 (MSMg01no083_k10.b1)MSMg01-083K10.TJ (MSMg01no083_k10.g1)
ACCAG303712AG303713
length707709
length of high quality
(start - end)
540 (42 - 581)515 (69 - 583)
definitionCHROMAT_FILE: MSMg01no083_k10.b1 PHD_FILE: MSMg01no083_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:26 2005CHROMAT_FILE: MSMg01no083_k10.g1 PHD_FILE: MSMg01no083_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTACGCTCTGTACCCCATTTTTAATGGGTTATTTGAATTTCTGG
AGTTCAGCTTCTTGGGCTCTTTGTATATATTGGATATTAGTCCCCTATCA
GATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGGTGCCCTTTTTAT
CTTATTGACAGTATCTTTTGCCCTACAGAAGCTTTGCAATTTTATGAGGT
CCCATCTGTCGATTCTAGATCTTATAGCACAGGCCAATGCTGTTCTGTTT
AGGAATTTTTCCTCTGTGCTGTTATCTTCGAGGCTTTTCCCCACTTTCTC
CTGTATAAATTTCAATGTCTCTGGTTTTATGTGGAGCTCTTTGATCCACT
TAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTTGCATTCTT
CTATATAGCATCATTTTCTTTTACCATTTACCATCAACACTATCCTATAA
TAAGAGTTTTATTTCCTTACTGGGAATGATCACATTAGTAATAGCGATGC
AATAGAAAAACTGCTTTTCTTTCCTTTTATTCAGTTATTTTTTCTTTTTT
AACGTTTCTGTATGTTGTTCTTCCTAACTACCTGGACACTTCTGTCCCCC
TAATGTACATTTACCCTAACTCAGTTCTACTGCTTAACCTCTTCTCCTAA
ATATTGG
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCTCGAGTGTATGGACTGCTTATCAATCACA
GATAACTTTTGGGTCCACATTGATCAGCTCCTTACTATCCCAATGAAACA
CAAAACCAAAACCACAGAATCTTTGTAATCAAAACAGCAATGACCCTGAG
AAGAGCCTTTAATCTTCCCTCCAAAATTTCACGAGCCAGGCTTCATCTTC
TGCACTGTTCTCAACATTATCTTCCAAGGTCCTACAGAACATCCCACAGA
GCTCTTAATACCCATGGTTCTTCTAGTCCAAAGTTCCAAAGTCGTTCCCA
GTCCTCTGCAAAGCATAGTCAGGTTGTCACAGGAATACCCCACTATGCTG
GTACCAATTTGTCTTAGTCAGGGTTTCTATTCCTACACAAACACCATGAC
AAGGAAGCAAAGTTGGGGAGGAAAGGGTTTATTCAGCTCACACTTCCACA
TTGCTTTTCATCACCAAAGGAAGAAAGGACTGGAACTCAAGCAGGCTAGG
AAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGGTACTGGCTTGCTTCC
GTATAGAATCTTGGACTACCCGTCTAGGGATAATACCACCCAAAAAAAGC
CCTCATACCTTTGATCCCTAGTTAAGATAATGCCTTCCAGCTGGTTCTCA
TGGAGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_k10.b1 MSMg01no083_k10.b1 CHROMAT_FILE:
MSMg01no083_k10.b1 PHD_FILE: MSMg01no083_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:26 2005
         (540 letters)



>mm_chr5_83917518_83918457
          Length = 940

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 216 tgtcgattctagatcttatagcacaggccaatgctgttctgtttaggaatttttcctctg 275
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 tgtcgattctggatcttatagcacaggccaatgctgttctgtttaggaatttttcctctg 881

                                                                       
Query: 276 tgctgttatcttcgaggcttttccccactttctcctgtataaatttcaatgtctctggtt 335
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tgccgttatctttgaggcttttccccactttctcctgtataaatttcaatgtctctggtt 821

                                                                       
Query: 336 ttatgtggagctctttgatccacttagacttgagctttgtacaaggagataagaatggat 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ttatgtggagctctttgatccacttagacttgagctttgtacaaggagataagaatggat 761

                                                                       
Query: 396 caatttgcattcttctatatagcatcattttcttttaccatttaccatcaacactatcct 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 caatttgcattcttctatatagcatcattttcttttaccatttaccatcaacactatcct 701

                                                                       
Query: 456 ataataagagttttatttccttactgggaatgatcacattagtaatagcgatgcaataga 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ataataagagttttatttccttactgggaatgatcacattagtaatagcgatgcaataga 641

                                    
Query: 516 aaaactgcttttctttccttttatt 540
           |||||||||||||||||||||||||
Sbjct: 640 aaaactgcttttctttccttttatt 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)