MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-083O20
Chromosome	5 (Build37)
Map Location	121,765,061 - 121,765,392
singlet/doublet	singlet
Overlap gene	AU042671
Upstream gene	LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802
Downstream gene	Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7
Link	Open Mouse BAC browser

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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-083O20.T7 (MSMg01no083_o20.b1)	MSMg01-083O20.TJ (MSMg01no083_o20.g1)
ACC	AG303920	AG303921
length	942	731
length of high quality (start - end)	---	335 (70 - 404)
definition	CHROMAT_FILE: MSMg01no083_o20.b1 PHD_FILE: MSMg01no083_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:48 2005	CHROMAT_FILE: MSMg01no083_o20.g1 PHD_FILE: MSMg01no083_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:48 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CCCCCCGGCGCCGCCNNCNCCCCCCCTCTTACCGCACAGCCGCGCGCGTC GTCCCTCCCCTCCCTCGTTCGTGTCTTTCTTCCGTCTCTTTTCCTTTTTT TCCTTTTCCTTCTTTTTCCTTCCTCTATTCCCCTTCTACATCACTTTCCC TCCTCCCGCCCCCTCCCCTTACCCCCTGTACCTGCTGTCCCTGGACTCTT ACCGCCGCCTGTCCTATGCACTCTGTTGTTAACTATGGGGGGAGATCGAC GATTGTATTCCTTGTGGGCTTGCCGCCCCGGCTCTCTTGTCGGTCGCTCC TTCCTACTTGTTCTGACTTCCGCCCACGTCTCTCGTTGTTTCTGTTTTTC TTGTCCGTTGTTGTGTCGGAGCGCTTAGTGTCGTTTAGATTATGGTTGTA TGTACATTGCTCTGATCTGGTCGTGTTGGTGGCGCGAGTTAGTGTGTTAT GGTCGTTATGGACAGGGAAGACGCGCGCACGTTTATGCGTATATATGTAG CCAGCTGAGAGTTGTAACAGGAGCGGGCATATAGGGGCTTGTCATTTATG AGGTTGATAGCGTGACCGGGCCGCTTGATGTGTAGGTCCGGACTGATATG TAGAGCACGCGCCAGAGCTGCTGCTCCGCGGTAAGAGCAGATGTGGGCTG ATTGGTGCCGATGCATACACTGGATGCTTGTGCGACATACAGTATGACAG CGAATTGAGTAAGTACGAGTGCGTCGACACTCGTGACTTGCCCGCTTTGT TCGAACGTAGATATAACTGAGATCTATCCGACGTGCATAGTGACTGAACA TTATAGAGGTGCATTGATGCGGTGCGNATGACTAATGTTATGCATGGGGT GCACGCGTCGCTGGTGCTTGTACCCCGCTATTTCTGGAGACGTTTTCGTA TANTATGCGCGGTGTNTCGTATTGGCGACTTTTGTGTGCAGN	GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXTTAGGACTGGTTTTTGTCAGTGTGGTGTCAG GTTCAGAAGCAGTTGGAGAGAGAACCGTCTGACATCCTTAAAGCAAACAT CAAGGCCCATTCAGAAACACTGCAGAACTATTTGTGAGGCTCCCCTCCCT TTCCCATCTCTCTCCTTCATCACAGAACACACAGGCACATCTGGGGCCCG GCCACAAGCAGGACTTAACTCCCAGACTATCCTGATGGACGGGCAGGCAC ACCTCACCTGGGACCACATAGTCTGCCAGCTTGGCTAAGAGCAGAGAGGC AATCTTGGAGGCAGGGTCACTGGGGTCCTCTTGCTCGCTGTTCAGGGAGG GGACGGACCACCCCCTTGGAGGGAGTGCTACTTTTTCTTTGTCCGCCTCG CTTCATTCAGGCGTAGTTTGTCCGGTTCATCTGAATATTTGTTGTTATCA GCATTTGTTGCCTGGTTTGTTATCTTGGTGGATGAGCCCAGACGCATATA TTTTTTTGTGTGGGGTTCGTGTGATGATGTGATATAACGGATGAATATTT ATTTTATCTTTTTATTTTATTTACCTCAATTTTTAGATGACTCCTGACTA CTGTAGGAATGGTTAAGTGATGTGAATGGGAACTGTCGTCTATTTTGCCC TTTTATTTATTTATTTTGTCTTGTGATTTTG
quality values	Open. Hide. 8 15 6 7 6 6 8 8 9 10 9 10 12 12 3 0 0 3 0 3 6 6 7 7 6 6 6 6 6 8 8 8 8 8 8 8 8 9 9 11 10 10 10 15 12 12 8 8 10 18 22 16 21 17 8 8 8 8 6 9 9 9 12 8 8 8 10 8 9 10 11 10 12 11 17 14 19 22 18 17 12 15 8 8 8 10 6 6 6 7 7 13 10 9 7 13 11 14 11 21 14 10 10 13 11 11 18 11 9 8 9 8 12 10 11 12 15 10 10 10 10 13 9 10 10 10 9 9 9 12 12 10 12 12 8 8 8 8 8 7 7 8 6 6 8 8 6 6 8 8 8 8 12 8 8 8 8 8 8 8 7 10 7 7 9 9 23 19 12 12 8 8 8 8 11 11 10 10 10 11 9 9 10 10 10 10 10 8 8 8 8 8 8 8 8 10 12 13 11 11 11 11 10 6 6 6 6 8 8 10 8 8 8 9 9 11 11 12 11 11 11 12 12 15 11 13 13 16 11 11 11 11 11 12 12 18 13 13 12 8 8 8 8 8 8 8 6 6 8 8 8 6 6 8 8 8 8 8 8 9 11 8 6 6 6 6 6 8 8 8 8 8 8 8 10 11 13 10 9 9 9 9 9 9 9 8 8 8 8 6 6 8 8 8 8 10 10 10 13 10 10 8 8 6 6 8 6 8 8 10 12 8 8 8 8 8 8 10 10 10 10 10 10 10 10 10 11 11 11 11 11 11 11 11 6 6 7 7 8 8 10 11 11 11 11 11 11 18 11 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 9 9 9 8 8 8 8 8 9 10 13 10 10 9 10 9 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 7 7 7 7 7 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 10 10 10 9 8 8 10 8 10 10 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 7 6 8 8 8 8 8 8 9 11 11 12 12 8 8 8 8 6 6 6 6 8 8 8 6 6 6 6 6 6 6 6 8 8 8 8 8 8 10 10 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 6 6 6 8 8 9 11 10 10 10 9 8 8 8 8 8 8 10 10 10 10 10 9 8 8 8 6 6 8 6 6 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 10 6 6 8 8 9 8 8 7 7 8 8 10 12 12 7 7 8 8 8 8 8 8 8 8 8 8 8 8 9 8 10 6 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 6 6 6 6 8 8 8 8 9 10 9 8 8 8 8 8 8 8 8 8 6 7 10 8 8 8 8 8 10 10 10 10 10 9 9 9 9 8 8 8 7 8 8 8 10 8 8 8 8 9 9 9 6 6 6 8 8 8 10 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 13 8 8 8 8 8 8 7 7 8 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 10 10 9 9 9 10 10 9 9 8 8 8 8 8 8 8 7 7 8 9 8 8 8 9 8 8 8 8 8 8 12 9 9 9 9 9 9 9 9 10 8 8 8 8 8 8 8 8 10 10 8 11 10 11 11 11 10 10 9 9 9 6 6 8 8 8 8 8 6 6 10 8 10 8 6 6 6 8 8 11 12 11 11 8 8 8 8 8 8 8 8 6 6 6 10 8 9 9 9 7 9 9 9 10 15 3 0 3 8 10 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 10 11 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 7 7 8 8 8 6 6 8 8 8 8 8 8 8 7 7 8 8 6 8 8 8 8 8 9 9 10 8 8 8 8 8 8 9 9 3 0 3 9 9 9 8 8 8 8 8 8 8 3 0 3 12 11 11 11 10 10 10 9 9 10 9 9 9 9 9 9 9 9 9 8 8 8 8 3 0	Open. Hide. 8 8 8 6 17 13 11 12 9 13 13 14 18 22 41 41 25 23 21 19 19 28 39 25 25 13 13 8 6 8 8 12 8 13 14 22 21 30 31 31 36 36 30 35 35 36 35 42 53 53 50 50 43 36 33 37 37 36 36 40 36 36 42 44 68 68 57 57 57 57 57 57 57 54 54 54 40 40 28 28 28 38 30 42 41 41 36 36 36 40 47 46 32 32 24 24 28 42 42 42 37 32 32 32 25 35 37 37 48 42 50 48 50 41 50 50 54 57 57 57 57 57 57 57 57 68 68 68 68 68 50 50 50 50 50 50 57 57 57 52 52 52 52 52 57 52 52 50 47 41 41 52 52 52 43 43 43 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 57 57 52 57 52 57 57 45 45 45 57 57 52 43 43 43 43 57 59 59 57 57 57 52 52 52 57 62 52 52 52 52 52 52 62 62 62 62 62 62 62 62 62 52 52 52 62 62 62 62 62 43 43 35 35 35 47 44 43 43 35 35 43 43 57 57 52 52 57 57 45 45 57 57 43 43 35 43 39 57 43 52 52 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 52 59 57 57 57 57 57 44 36 28 28 33 38 43 32 29 29 35 43 43 52 52 52 52 57 57 57 52 52 52 57 59 52 52 43 44 57 43 46 43 42 42 43 43 48 48 57 50 57 48 48 48 48 57 59 54 44 44 28 36 23 23 23 40 40 43 47 47 57 57 57 57 37 37 37 47 59 59 47 43 37 37 39 41 43 41 36 23 28 36 30 37 37 47 43 43 43 43 43 43 48 57 57 57 48 43 43 32 39 30 30 25 28 23 32 24 25 25 33 34 37 37 25 19 18 15 19 10 10 6 6 6 6 6 10 10 10 9 9 9 9 19 17 18 11 11 11 11 8 8 8 8 8 10 11 11 10 10 10 9 8 8 13 8 8 8 8 7 7 8 8 8 8 10 12 13 11 8 8 8 6 6 8 8 6 6 8 8 8 8 8 8 8 8 10 10 10 10 10 10 8 8 7 7 8 10 8 8 8 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 6 10 11 11 9 9 9 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 6 6 8 8 8 8 8 8 8 8 8 10 11 11 11 9 8 8 8 8 8 8 8 8 8 8 8 11 11 8 8 6 6 8 8 6 6 8 8 8 10 8 8 8 8 8 8 10 6 6 8 8 6 6 6 8 8 9 9 8 8 8 8 8 10 10 6 6 8 8 10 13 12 10 8 6 6 8 10 8 10 8 8 8 11 11 11 12 8 8 8 8 8 8 9 8 8 8 8 10 7 6 8 8 9 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 6 6 8 6 8 8 8 10 8 10 8 8 8 8 10 11 8 8 8 9 8 8 8 8 8 8 12 12 11 10 8 8 8 8 6 6 8 8 8 8 11 10 10 10 10 10 8 8 8 10 10 13 13 8 8 9 9 9 9 9 8 8 8 8 8 8 12 15 9 9

Alignment Information

BAC End 1	BAC End 2
	Query= MSMg01no083_o20.g1 MSMg01no083_o20.g1 CHROMAT_FILE: MSMg01no083_o20.g1 PHD_FILE: MSMg01no083_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:48 2005 (335 letters) >mm_chr5_121764861_121765592 Length = 732 Score = 625 bits (323), Expect = 0.0 Identities = 331/335 (98%), Gaps = 3/335 (0%) Strand = Plus / Minus Query: 1 ttaggactggtttttgtcagtgtggtgtcaggttcagaagcagttggagagagaaccgtc 60 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 532 ttaggactggtttttgtcagtgtggtgtcaggttcagaagcagttggagagagaaccgtc 473 Query: 61 tgacatccttaaagcaaacatcaaggcccattcagaaacactgcagaactatttgtgagg 120 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 472 tgacatccttaaagcaaacatcaaggcccattcagaaacactgcagaactatttgtgagg 413 Query: 121 ctcccctccctttcccatctctctccttcatcacagaacacacaggcacatctggggccc 180 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 412 ctcccctccctttcccatctctctc---catcacagaacacacaggcacatctggggccc 356 Query: 181 ggccacaagcaggacttaactcccagactatcctgatggacgggcaggcacacctcacct 240 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 355 ggccacaagcaggacttaactcccagactatcctgatggacgggcagacacacctcacct 296 Query: 241 gggaccacatagtctgccagcttggctaagagcagagaggcaatcttggaggcagggtca 300 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 295 gggaccacatagtctgccagcttggctaagagcagagaggcaatcttggaggcagggtca 236 Query: 301 ctggggtcctcttgctcgctgttcagggaggggac 335 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 235 ctggggtcctcttgctcgctgttcagggaggggac 201 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 15 Number of extensions: 2 Number of successful extensions: 2 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 335 Length of database: 732 Length adjustment: 9 Effective length of query: 326 Effective length of database: 723 Effective search space: 235698 Effective search space used: 235698 X1: 8 (15.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 8 (16.4 bits) S2: 8 (16.2 bits)

BAC End 1

BAC End 2

Query= MSMg01no083_o20.g1 MSMg01no083_o20.g1 CHROMAT_FILE:
MSMg01no083_o20.g1 PHD_FILE: MSMg01no083_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:48 2005
         (335 letters)



>mm_chr5_121764861_121765592
          Length = 732

 Score =  625 bits (323), Expect = 0.0
 Identities = 331/335 (98%), Gaps = 3/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggactggtttttgtcagtgtggtgtcaggttcagaagcagttggagagagaaccgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttaggactggtttttgtcagtgtggtgtcaggttcagaagcagttggagagagaaccgtc 473

                                                                       
Query: 61  tgacatccttaaagcaaacatcaaggcccattcagaaacactgcagaactatttgtgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgacatccttaaagcaaacatcaaggcccattcagaaacactgcagaactatttgtgagg 413

                                                                       
Query: 121 ctcccctccctttcccatctctctccttcatcacagaacacacaggcacatctggggccc 180
           |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 412 ctcccctccctttcccatctctctc---catcacagaacacacaggcacatctggggccc 356

                                                                       
Query: 181 ggccacaagcaggacttaactcccagactatcctgatggacgggcaggcacacctcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 355 ggccacaagcaggacttaactcccagactatcctgatggacgggcagacacacctcacct 296

                                                                       
Query: 241 gggaccacatagtctgccagcttggctaagagcagagaggcaatcttggaggcagggtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gggaccacatagtctgccagcttggctaagagcagagaggcaatcttggaggcagggtca 236

                                              
Query: 301 ctggggtcctcttgctcgctgttcagggaggggac 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ctggggtcctcttgctcgctgttcagggaggggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 732
Length adjustment: 9
Effective length of query: 326
Effective length of database: 723
Effective search space:   235698
Effective search space used:   235698
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

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BAC End Information

Alignment Information