BAC Information

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BAC

Clone NameMSMg01-084E12
Chromosome5 (Build37)
Map Location 110,873,230 - 111,004,461
singlet/doubletdoublet
Overlap genenone
Upstream geneEG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik
Downstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084E12.T7 (MSMg01no084_e12.b1)MSMg01-084E12.TJ (MSMg01no084_e12.g1)
ACCAG304182AG304183
length687729
length of high quality
(start - end)		370 (46 - 415)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no084_e12.b1 PHD_FILE: MSMg01no084_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:16 2005CHROMAT_FILE: MSMg01no084_e12.g1 PHD_FILE: MSMg01no084_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,004,095 - 111,004,461)(110,873,230 - 110,873,474)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATGTACCCCCTGCCTCCTCACCACCACATCTGGCAAAATCTT
ACTATCTTTAAACACATTACACTTTGTGCCTTTCGTCAAAGACGGGCACC
CCCCAGGGCAGACAGACACACAGCAGCTTCCAGGCTGGTGGGAGAGCAGT
TCTGATACCCTCTGACTATTCCTCAGACCCTGCAGCCTGGCTGAAGGACG
TTCAGGGGGAGCTAGCACCCAGCTTTGGAGCTTTCCCCGTAAAAGCAAAG
TATCCACTTGATGAACTGTCCGATCAATCCAGTACACACCACTTGTGTTC
ACTTGCCTGCAACCCCACCCTTGGAAGTACTTGGCTCAGTGGCCTGCTGC
ATTCTTTTCATATTGCAGTCAGTATATGAGCACTGTAGCACTGATAGGCA
AGTCCCAGGGCTCCTCAGTGCGAAAAATGAGCGGAATCTGTTTCCACCTC
CACCTCCATCCCCTCCCCTGTGCCTCCTTCCCTCGATTTTTCTCAGCTCT
GCCTCTACCTTTACCGATTCCGGTGTTTGCCCTTGTGACTCCTAGCACAA
TGCTGAACGCCCTATCTCCGGAAACGTCCACTTCTGGCACGTCTCTTGAT
GCCCAACCTGTAATGTGAGGCACGTATTGTCTTCTCG

NCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCCCACTGTAGATGGCATCGC
ATCCATATACCCGACTGCACCTCCATTGTGAGAAACCTTCCACTTGCTTG
GCTCTGTGCCTTCCCTGTCTAGGCAGCACAGCTCTCTATGCCACTATAAG
GAATCCTCTAAGTGCCAGTGCCATAGTTGTTACTTGCTATGACTTCACTG
TGAGTAAGTGGCACCTCCCTTCAAGTGTAGGGGTACATCTGTCCCTGGCT
ACTTCCCTAGACAGAGGCTCTAATTTATAGCAGACTCCATGGAATGTGGC
ACTGGGGTTGAAGCATCAGGACACCCAATTTTCTTTTGTCCTGCCTTGAT
TTTTTGTTTTCCAAGACAGGGTTTCTCTGTGTAGCCCTTGGTTGCTCCGT
AAACAGCTATGCTTACCTTTTTATATTTGAATTTTATCCCTTTTTCCCAT
TTATTCCCGTTTTCTCCCCTTTCCTTCCCGCCTTTTATTTTATTCAATAA
CTTTCGACACAATACTTTCGCATCCTCCGCCCGTTTTTTTTTATTTTCCT
TCCCTTTCTCTCTCTTTTTTCTTCGCCCCTTACTGTTTTTCCCCCTTTTT
TCTTTAATCCTACTTTTTTTCACCACTCCCCCCATTTACTTACTTTGTTC
CCAGTATTTATATATATTCACCATTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_e12.b1 MSMg01no084_e12.b1 CHROMAT_FILE:
MSMg01no084_e12.b1 PHD_FILE: MSMg01no084_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:16 2005
         (370 letters)



>mm_chr5_111003892_111004661
          Length = 770

 Score =  656 bits (339), Expect = 0.0
 Identities = 360/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactatgtaccccctgcctcctcaccaccacatctggcaaaatcttactatctt 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggaattcactatgtagcccctgcctcctcaccaccacatctggcaaaatcttactatctt 511

                                                                       
Query: 64  taaacacattacactttgtgcctttcgtcaaagacgggcaccccccagggcagacagaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 taaacacattacactttgtgcctttcgtcaaagacgggcaccccccagggcagacagaca 451

                                                                       
Query: 124 cacagcagcttccaggctggtgggagagcagttctgataccctctgactattcctcagac 183
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 450 cacagcagcttcaaggctggtgggagagcagctctgataccctctgactattcctcagac 391

                                                                       
Query: 184 cctgcagcctggctgaaggacgttcagggggagctagcacccagctttggagctttcccc 243
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 390 cctgctgcctggctgaaggacgttcagggggtgctagcacccagctttggagctttcccc 331

                                                                       
Query: 244 gtaaaagcaaagtatccacttgatgaactgtccgatcaatccagtacacaccacttgtgt 303
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 330 gtaaaagcaaagtatccacttgatgaactgtccgatcaatccagcacacaccacttgtgt 271

                                                                       
Query: 304 tcacttgcctgcaaccccacccttggaagtacttggctcagtggcctgctgcattctttt 363
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcacttgcgtgcaaccccacccttggaagtacttggctcagtggcctgctgcattctttt 211

                  
Query: 364 catattg 370
           |||||||
Sbjct: 210 catattg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no084_e12.g1 MSMg01no084_e12.g1 CHROMAT_FILE:
MSMg01no084_e12.g1 PHD_FILE: MSMg01no084_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:16 2005
         (245 letters)



>mm_chr5_110873030_110873674
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcccactgtagatggcatcgcatccatatacccgactgcacctccattgtgagaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcccactgtagatggcatcgcatccatatacccgactgcacctccattgtgagaaac 260

                                                                       
Query: 61  cttccacttgcttggctctgtgccttccctgtctaggcagcacagctctctatgccacta 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttccacttgctcggctctgtgccttccctgtctaggcagcacagctctctatgccacta 320

                                                                       
Query: 121 taaggaatcctctaagtgccagtgccatagttgttacttgctatgacttcactgtgagta 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 taaggaatcctctaagtgccagtgccatagttgttacttgctatgactccactgtgagta 380

                                                                       
Query: 181 agtggcacctcccttcaagtgtaggggtacatctgtccctggctacttccctagacagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggcacctcccttcaagtgtaggggtacatctgtccctggctacttccctagacagag 440

                
Query: 241 gctct 245
           |||||
Sbjct: 441 gctct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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