BAC Information

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BAC

Clone NameMSMg01-084K21
Chromosome5 (Build37)
Map Location 83,563,768 - 83,563,999
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084K21.T7 (MSMg01no084_k21.b1)MSMg01-084K21.TJ (MSMg01no084_k21.g1)
ACCAG304467AG304468
length723724
length of high quality
(start - end)
223 (47 - 269)232 (74 - 305)
definitionCHROMAT_FILE: MSMg01no084_k21.b1 PHD_FILE: MSMg01no084_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:46 2005CHROMAT_FILE: MSMg01no084_k21.g1 PHD_FILE: MSMg01no084_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCATCAATATATTCCACTATATAAACTATATAAACAAACTCAGAG
ACAAAAGAGAAGGCATTTGATAAAATCCAACACCCATTCATGATAAAAGT
CTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAA
TCTACAGCAAACCAGTAGTCAACATCAAAGTAAATGGTGAGAAGCTTGAA
GCAATCCCACTAAAATCAGGTACTAGAAATGGCTGCACACATTCTCCATA
CCTATTAAATATAGTACTTGAAGTCCTATCCAGAGCAATTCGAAAAGAAT
AGCAGATCAAGGTGATACTAATTGTATAGGAAGAAGTCTAAATATCACAT
TTTGCAAATGATATGATAGTATTTATAAGTGACCCTAATAATTCCACCAG
AGAACTCCTAAATCTTGATAAACATGTTTCAGTGAAGTAGCTGGATATAA
AAATAATTCAAACTAGTCAATGCTCTTTCTCTACACAAAGGATAAAGAGG
TTGATATATATATTATGGAAAAAAAACCCTACACAATACTCACAAAAAAT
AAAAAATTCCTTTGTAATGACTCTAAATAATGAATGGCAAAATCTGTATG
ATTAAACCTTCATAGTCTCTGATTAAAGGAATCTCAATAAAATTCTTAAA
AACATCAAAATATTATATGTTCT
ATTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATAGCATATTTGCATATTATGCAT
ACTAATCACCCAGATATCTGACAGCTATCTCAATTAAAAAAGGAAAACAT
GAATAACCAAGACAAATTTTCACTAGTGACATCTGAGAGACTCAGAGCAT
TTCCCTTAGTTAAGAATATGAGGTGAATTCCACTCTGTGCTTATCATAAA
AGTTGAAAATTATTGGGAGTAAAAATGAAGGATCTTCATAACAAGAAGTG
ATAATTAGACAAACTAATGCATATGCCAATTAACTCTAAGGCCACTTTTT
AAGGATGCTTCAGTCACACTTACAAAACAACATGAATGTTTATAAATAAG
TATTTTTATGTTAGTTGCTTTAAACTTCAGAAAGTAATAGATTATGACAT
ATAAGCTATCTAGCCATATTAAATCTGTTAAGGAACAGACGTTTGGAGCA
ATAAAGTTTTCTTTAGCGAAATGACAGCGAATTATTAATTTTTGAACAAA
TTAATAGCCATAAGACTCCATTTATTCAACTATCCTGATTAAGATTTTGG
AATTACATCGTCCAATCACTTCTTCAACCTTTGGCTTTAATATTTCATAA
CCTCAAAAGCTCTTTTATGTATACTTATTCTTACATTTATTATATCTATT
TATTTCTGGTCTATAATCTAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_k21.g1 MSMg01no084_k21.g1 CHROMAT_FILE:
MSMg01no084_k21.g1 PHD_FILE: MSMg01no084_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:46 2005
         (232 letters)



>mm_chr5_83563568_83564199
          Length = 632

 Score =  426 bits (220), Expect = e-124
 Identities = 229/232 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatagcatatttgcatattatgcatactaatcacccagatatctgacagctatctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 432 tttatagcatatttgcatattatgcatactaatcacccagatatctgacagttatctcaa 373

                                                                       
Query: 61  ttaaaaaaggaaaacatgaataaccaagacaaattttcactagtgacatctgagagactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttaaaaaaggaaaacatgaataaccaagacaaattttcactagtgacatctgagagactc 313

                                                                       
Query: 121 agagcatttcccttagttaagaatatgaggtgaattccactctgtgcttatcataaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agagcatttcccttagttaagaatatgaggtgaattccactctgtgcttatcataaaagt 253

                                                               
Query: 181 tgaaaattattgggagtaaaaatgaaggatcttcataacaagaagtgataat 232
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 252 tgaaaattattgggagtaaaaatgaaggatctttatatcaagaagtgataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)