BAC Information

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BAC

Clone NameMSMg01-084M10
Chromosome5 (Build37)
Map Location 20,413,425 - 20,413,776
singlet/doubletsinglet
Overlap geneRsbn1l
Upstream geneMagi2, LOC100041850, Phtf2, LOC622367, Tmem60
Downstream genePtpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084M10.T7 (MSMg01no084_m10.b1)MSMg01-084M10.TJ (MSMg01no084_m10.g1)
ACCAG304536AG304537
length695695
length of high quality
(start - end)
342 (45 - 386)355 (76 - 430)
definitionCHROMAT_FILE: MSMg01no084_m10.b1 PHD_FILE: MSMg01no084_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:54 2005CHROMAT_FILE: MSMg01no084_m10.g1 PHD_FILE: MSMg01no084_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCATCTGATCTCAGAGCTACCAAGAGCTGGCTCCTTGAGCTCATC
TAGTGATGAGTATAGGCTCCTTCTCCTAGAGACCTCCGCTAATTGATCTT
TTTTCTTTTCTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAGGTATTC
TTACCTGACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGT
ATTCTTAGTTTGTGTACCATATTTCCTCTTTGCTCCTACTCTCTTTCCCC
GCTTTACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCT
ACCTTAACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCCTAACAC
TAGAAAAAGTTCAAGGCCCAACATACCTTGCAAAGCTATTTCCCACTTTA
CTTCTGATAGACTGTCTTGAATTTCGCTAGAAAGTTTAAGGCCAGACGTA
CCTTGTAAAGCTATACTCACTGGTACCCCTGTTCCCCAGCTGAATAGTTC
TGAATTCCCGCCCCTGTATCCTTCCCATTAGTCTGTTTTACTGTATTTCT
TCCTTATTACTATTCCCCAGCTGATGACCTCAACTGTCTGTTTTACGGGA
ATATTTCCTTACCATGATTTTTTGTCCCTGTTTTCTTCAATGACT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAAGCTGGTCTCCA
AATCACAGAACCCTGCCTGCCCCTGCCTCTCTCCTGAGTGCTGAGATTAA
AGGTCTGCACCATCATGCCGCTCAACATAATTAGAAAAAAGTTTATTTAA
ATCAGGGGAAAGGAAGGAAACAGTGATCTTGTGTTACGTATATACGTAAC
TTCTCACTCTTAACTGTAATGGCCAAGTTAAATGTTACACCAGCAAATGC
CCTTGCCTGTTACTGCCCTGTGTGTCTTGTATACCAAGAAGTGTAGGAAG
GATGCCTGTTAAACACTTTGAGCACAAAGGGGGTGGGGGGTGGCTGACAC
TGTGGTAAACTGGCCGAGCTAGGGACTTGTACAGTTGTATAAAACATCGA
GTTCACGCCCCATCATAGTCCATAAAAGTTCTAATCAAGGTCCATTTGAT
ATTTCTTTATAAATGTATTCTTTATTGTTAGTCTATGTGTTGTATGGCAC
ATATGTGCATGTGGCAGTCAGTAGACAACTTGGCGGAATCCCTTTTTTCT
TCTCTTCCTTTTTTCTATGGAGCCTCATCTCTCCTTCTTTATTTGCATGA
TTTGTGGCCCCAGATTTTTATTTTTGCGTGCCCATGTTTCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_m10.g1 MSMg01no084_m10.g1 CHROMAT_FILE:
MSMg01no084_m10.g1 PHD_FILE: MSMg01no084_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:54 2005
         (355 letters)



>mm_chr5_20413131_20413885
          Length = 755

 Score =  640 bits (331), Expect = 0.0
 Identities = 348/355 (98%), Gaps = 3/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaagctggtctccaaatcacagaaccctgcctgcccctgcctctctcct 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 646 actctgtagaccaagctggtctccaaatcacagaactctgcctgcccctgcctctctcct 587

                                                                       
Query: 61  gagtgctgagattaaaggtctgcaccatcatgccgctcaacataattagaaaaaagttta 120
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 586 gagtgctgagattaaaggtctgcaccatcat---gctcaacataattagaaaaaagttta 530

                                                                       
Query: 121 tttaaatcaggggaaaggaaggaaacagtgatcttgtgttacgtatatacgtaacttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tttaaatcaggggaaaggaaggaaacagtgatcttgtgttacgtatatacgtaacttctc 470

                                                                       
Query: 181 actcttaactgtaatggccaagttaaatgttacaccagcaaatgcccttgcctgttactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 actcttaactgtaatggccaagttaaatgttacaccagcaaatgcccttgcctgttactg 410

                                                                       
Query: 241 ccctgtgtgtcttgtataccaagaagtgtaggaaggatgcctgttaaacactttgagcac 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccctgtgtgtcttgtagaccaagaagtgtaggaaggatgcctgttaaacactttgagcac 350

                                                                  
Query: 301 aaagggggtggggggtggctgacactgtggtaaactggccgagctagggacttgt 355
           |||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 349 aaagggggtggggggtggctgacactgtgggaaactggccgaggtagggacttgt 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)