BAC Information

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BAC

Clone NameMSMg01-084N02
Chromosome5 (Build37)
Map Location 143,995,470 - 143,995,966
singlet/doubletsinglet
Overlap genenone
Upstream geneD930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb
Downstream geneZfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N02.T7 (MSMg01no084_n02.b1)MSMg01-084N02.TJ (MSMg01no084_n02.g1)
ACCAG304566AG304567
length753752
length of high quality
(start - end)
363 (129 - 491)497 (135 - 631)
definitionCHROMAT_FILE: MSMg01no084_n02.b1 PHD_FILE: MSMg01no084_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:57 2005CHROMAT_FILE: MSMg01no084_n02.g1 PHD_FILE: MSMg01no084_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCTTTCTTCTTCTTTCTTTTTCTTTTCTCTTTCTTCCTTCTTTCTTTCT
CCTTTTTTCCTTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCCAAATTCCAGGGAGCTATAGCTCAGTGGGCG
AGCACTTGCTTAGCATGAGCAAGGCTCCATCCTCATGGATGGAAAAAGAA
AACCAGGCTGTGGTGACAACGCACCCGTAATCCCAGCACTTGGGAGACGG
AGGCAGGAGGATCAGGAGCTCAAGGCCAGACTGAGCTACAGGAGAGTCTG
AGATCAGCTTGACTGCATGAGACCATGTTGGAGAGAGGAGAGAGGAGAGA
GAGGAAGAGGAAGGGACAGATGGGGGCTCTCCTCCCAGCCAAGCACCCGA
GTGTCGCCAGGTAATGAGGGAGAAGTGGCCACCAGCCTTCTGGGAGGCAA
GAACAGGTGCCTGTGTGTTACCTGGCTGGCAGGCGACCTGGAAGGCAGCT
ACCCCGAGGGCCTGCTCATCCGTCATGTTTGTGTATCCGAGGAAGCACGC
GATCTTCTCCTGACACAGCTCCTGCTCCTCGTAGGTCAGCAGCTGGTATA
GGAACTGCCAGAGTACCTGCTTGGCGGAAGTGTCCAGTACGTTTTACACA
TCCACTATGAGGGTACCGATGTTCCTGCGTCTGGGTTCTCAGGATCTCAT
CACTTCTAGTTGCGTAAGCAGTGTCTTATCCTTTTTTTCAATACCTTTTT
TAC
TTTTTTTTTTTNNNTTTTTTTTTNTTTTTTNNTTTTTTTTTTTTTTTTTN
CTTCTTTTNAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCTGAAAGGCCT
GAGTCCCATCTGTGCAATGTAAACCTGGAGAAAAGAGTGTTCCTATCTCC
CTGTCAGCTGGGGAGTTTAGCCCGGGCCCCTCATTCAGAGACGTAACCCC
TGCTAGCCACGGGGAAGGGAAGCTTTTGGTTTAAGAGATAGGAGCCAGCT
CAGGTGGGCACCTCAGTGACCAGGTGAGGTGAGAACCCGGGAGAAGGTGC
CCCATGGCAGTGCAGGCCTTCCGAGGAGGAGGGCTCACCCTTTCTCCTGA
GACCATGTGTGCCCTGCAGCATCTGAGAGGGATTCGGGATGCTTCTGTCT
CCTGCTGGTTGCTCAGCAGTTTATTACCTAGGGTTGGCGCTCCAAGGTGC
TTGGTGCTTCTGGGATGAAAACGTTACTCTCTGCATTGGTGCAGAGAACT
TTCTGTTTTGGCAGACTTTGTTATTAGTTTTGATGCCAACGTCTTTATGA
AGAATTAGACCAAGACCACTGCTGCATTAGTTCTGTAAGAAGTCGATGGA
ATGTTCATTGTATTGTACCATCTCTGAAAACTGTCATTTGTCGCCTGGCC
CCAAATGTCACCTTTCAGAGATCAATTAACAGAGAGTTATTTTCCCTTCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n02.g1 MSMg01no084_n02.g1 CHROMAT_FILE:
MSMg01no084_n02.g1 PHD_FILE: MSMg01no084_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:57 2005
         (497 letters)



>mm_chr5_143995270_143996166
          Length = 897

 Score =  891 bits (461), Expect = 0.0
 Identities = 488/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttctgaaaggcctgagtcccatctgtgcaatgtaaacctggagaaaagagtgttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttctgaaaggcctgagtcccatctgtgcaatgtaaacctggagaaaagagtgttcct 260

                                                                       
Query: 61  atctccctgtcagctggggagtttagcccgggcccctcattcagagacgtaacccctgct 120
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 atctccctgtcacctggggagtttagcccaggcccctcattcagagacgtaacccctgct 320

                                                                       
Query: 121 agccacggggaagggaagcttttggtttaagagataggagccagctcaggtgggcacctc 180
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccatggggaagggaagcttttggtttaagagataggagccagctcaggtgggcacctc 380

                                                                       
Query: 181 agtgaccaggtgaggtgagaacccgggagaaggtgccccatggcagtgcaggccttccga 240
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttaccaggtgaggtgagaacctgggagaaggtgccccatggcagtgcaggccttccga 440

                                                                       
Query: 241 ggaggagggctcaccctttctcctgagaccatgtgtgccctgcagcatctgagagggatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggagggctcaccctttctcctgagaccatgtgtgccctgcagcatctgagagggatt 500

                                                                       
Query: 301 cgggatgcttctgtctcctgctggttgctcagcagtttattacctagggttggcgctcca 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtgatgcttctgtctcctgctggttgctcagcagtttattacctagggttggcgctcca 560

                                                                       
Query: 361 aggtgcttggtgcttctgggatgaaaacgttactctctgcattggtgcagagaactttct 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgcttggtgcttctgggaagaaaacgttactctctgcattggtgcagagaactttct 620

                                                                       
Query: 421 gttttggcagactttgttattagttttgatgccaacgtctttatgaagaattagaccaag 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttggtagactttgttattagttttgatgccaacgtctttatgaagaattagaccaag 680

                            
Query: 481 accactgctgcattagt 497
           |||||||||||||||||
Sbjct: 681 accactgctgcattagt 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)