BAC Information

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BAC

Clone NameMSMg01-084N24
Chromosome5 (Build37)
Map Location 32,717,695 - 32,718,196
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350
Downstream geneLOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N24.T7 (MSMg01no084_n24.b1)MSMg01-084N24.TJ (MSMg01no084_n24.g1)
ACCAG304608AG304609
length743712
length of high quality
(start - end)
---502 (57 - 558)
definitionCHROMAT_FILE: MSMg01no084_n24.b1 PHD_FILE: MSMg01no084_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:01 2005CHROMAT_FILE: MSMg01no084_n24.g1 PHD_FILE: MSMg01no084_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTCAAGCTCTCCGACGCATGATTTAGTGTGATTATTTGAACTCT
ATGTACTCAACATCCTGACTGCTTTATAGATATTGTAGATTAGTCCCCTA
TCTGATTGATAATAGTGAAAGATTCTTTACCCAATCTGTTGTCGGCCTTT
TTGTCTTATTGAAGGCGTCTTTTGGCCTTACTNGAGCTGTCCAATGTTAT
GACTACCTTTTGTTAGGATGCTCTGTCTTACCTGACAGGTCTATCTGCTG
TTCTATTCAGGAATGTTTCCCCTGTGACCGTATCTTTGAGGGTTTTCCCC
ACTTTCACCTCGTATAGTGTCAGTGCCTCTGCTTCCTCACGCACTGACTC
TGATGCCACTCAGACTTGACCTTACGACAAGCAGATACAAATGACTCAAT
TCGCATTCTATCTACTAGTTACACTAGATCAGGTGTGACACGCACCATTA
TGTCGTGAATGCTGTCTTTCTTCCACTGGACGGGATTAGCTCCCTTGCCG
CAGAGCTGGCGATCATACATGTGCGCCGTCATCCTGAGGACTTCCATTCT
ATTCATGCGCACTACATAGCTGTCGCAATCCCACTGCCATGCAGTTATTA
TCACCGTTGCCCCCTAGGACCTCTCTAGAGCGCTCTTGCTTATCCACCCA
GACGCTTATATGCATGATGACAGTCTTTGCTCCCCTAGGATTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCC
AATCCAGCACCTGGGAGGTGGAGGCAGGAGAATCAGTAAAATAAAACCAT
CCTCAGTGATTCAGACAGTTTGAGGCCAACCTGGGCTAAATGACAGAGGT
CAACTTAGGCTACATGAGAAAAAAATGTCCATAATTCAGATTTGTCAATA
TGCACTAGACTATGTCCAGTCTTCAATGTCTCTCATGAAGGCATCATTTC
TGCCTTATCATTTTGATCTTGCAAATCCACATGAAGCTTTGCAGTTATGA
ACTTGCATTTGTCCCGAATCCCGGTCTTTCTAGCAAATTCATTTAAAGCA
GAAGCTCCGGCTGTTGGGTTTCTAAACCTAACTAGGTGCCCTGTGCAGAA
CTGAGTCAAGACCGGCAGAATGGTGTCCCTTTAGCATGCTAAACGTGACC
CCAAAGTGCCTTCAAAGCAGTTCTCAGCTGTTTCTGTGGCCCACAGAGGA
ATGCTTCCTCCTCCAGGTCTGAGAAGGACTGGGCATGGTGGCCTGCTGTC
CCAGCACTCAGGAGGCTGAGAACAGGCAGGAAAATCTTGGATTTGAGGAC
ACCCTTAGGAATACAGTGAGATTCCATCTCAAGAGCCCTCTGCTGTCTGC
CCCTCCTTGTCCCCAACAAACCACACACACACACACATATACGCGCACTT
ACTCACATTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n24.g1 MSMg01no084_n24.g1 CHROMAT_FILE:
MSMg01no084_n24.g1 PHD_FILE: MSMg01no084_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:01 2005
         (502 letters)



>mm_chr5_32717495_32718396
          Length = 902

 Score =  932 bits (482), Expect = 0.0
 Identities = 497/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacctgggaggtggaggcaggagaatcagtaaaataaaaccatcctcagtgattcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacctgggaggtggaggcaggagaatcagtaaaataaaaccatcctcagtgattcagac 260

                                                                       
Query: 61  agtttgaggccaacctgggctaaatgacagaggtcaacttaggctacatgagaaaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttgaggccaacctgggctaaatgacagaggtcaacttaggctacatgagaaaaaaat 320

                                                                       
Query: 121 gtccataattcagatttgtcaatatgcactagactatgtccagtcttcaatgtctctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccataattcagatttgtcaatatgcactagactatgtccagtcttcaatgtctctcat 380

                                                                       
Query: 181 gaaggcatcatttctgccttatcattttgatcttgcaaatccacatgaagctttgcagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggcatcatttctgccttatcattttgatcttgcaaatccacatgaagctttgcagtt 440

                                                                       
Query: 241 atgaacttgcatttgtcccgaatcccggtctttctagcaaattcatttaaagcagaagct 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 atgaacttgcatttgtcccgaatcccggtctttctagcaaattcttttaaagcagaagct 500

                                                                       
Query: 301 ccggctgttgggtttctaaacctaactaggtgccctgtgcagaactgagtcaagaccggc 360
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 ccggctgttgggtctctaaacctaactaggtgtcctgtgcagaactgagtcaagaccggc 560

                                                                       
Query: 361 agaatggtgtccctttagcatgctaaacgtgaccccaaagtgccttcaaagcagttctca 420
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaattgtgtcccgttagcatgctaaacgtgaccccaaagtgccttcaaagcagttctca 620

                                                                       
Query: 421 gctgtttctgtggcccacagaggaatgcttcctcctccaggtctgagaaggactgggcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgtttctgtggcccacagaggaatgcttcctcctccaggtctgagaaggactgggcat 680

                                 
Query: 481 ggtggcctgctgtcccagcact 502
           ||||||||||||||||||||||
Sbjct: 681 ggtggcctgctgtcccagcact 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)