Query= MSMg01no084_o24.b1 MSMg01no084_o24.b1 CHROMAT_FILE:
MSMg01no084_o24.b1 PHD_FILE: MSMg01no084_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:06 2005
(248 letters)
>mm_chr5_117024820_117025467
Length = 648
Score = 426 bits (220), Expect = e-124
Identities = 241/248 (97%)
Strand = Plus / Minus
Query: 1 atctccatgccaagatccaggacagaaacttgaatctctcagcctcctgattaggatcac 60
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct: 566 atctccatgccaagatccaggacagaaacttgtatctctcagcctccagattaggatccc 507
Query: 61 tggtgagccttccaattctggattgtagtcaagttgacaaccaggaacagccactacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggtgagccttccaattctggattgtagtcaagttgacaaccaggaacagccactacaga 447
Query: 121 cctaaagcacacatataatcactcgttctttggtacagagaatagtaaaggttacgtgac 180
|||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct: 446 cctaaagcacacatataaccactcgttctttggtacagagagtaataaaggttacgtgac 387
Query: 181 attcagccttgtgatgaaatggggacagtcaacctaatcattctgccatctattaaatga 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attcagccttgtgacgaaatggggacagtcaacctaatcattctgccatctattaaatga 327
Query: 241 ctcatgag 248
||||||||
Sbjct: 326 ctcatgag 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no084_o24.g1 MSMg01no084_o24.g1 CHROMAT_FILE:
MSMg01no084_o24.g1 PHD_FILE: MSMg01no084_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:06 2005
(548 letters)
>mm_chr5_116934574_116935521
Length = 948
Score = 986 bits (510), Expect = 0.0
Identities = 536/554 (96%), Gaps = 17/554 (3%)
Strand = Plus / Plus
Query: 1 tggtgacagatcctatgtgcagactgtagatcaggcttgaccctctgttacaaatcaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tggtgacagatcctatgtgcagactgtagatcaggcttgaccctctgttacaaatcaagg 253
Query: 61 tgacaggacttgactgcaaagagtcacagcccttcaagggagccggctttagctgtagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgacaggacttgactgcaaagagtcacagcccttcaagggagccggctttagctgtagcc 313
Query: 121 cgcatcatgtctttctgtttccagtctttcgtcttcttggggcttcgagaaaaaaaaa-t 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 314 cgcatcatgtctttctgtttccagtctttcgtcttcttggggcttcgagaaaaaaaaaat 373
Query: 180 tcagtgttccatatcagctgaagcatgcccacagctgctttgtctttaccacagagttac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcagtgttccatatcagctgaagcatgcccacagctgctttgtctttaccacagagttac 433
Query: 240 tcaatgttgtaatgtcttttcttttctttcttcaatacttaaaagaaggcaagatcttca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcaatgttgtaatgtcttttcttttctttcttcaatacttaaaagaaggcaagatcttca 493
Query: 300 ggggacagctgagagtcaagggccggcacactccacttcacggtgtgtgtgtgtgtgtgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggggacagctgagagtcaagggccggcacactccacttcacggtgtgtgtgtgtgtgtgt 553
Query: 360 gtgtgtgtgtg------ctcaagttcctgaggcttttccttcctctctgcattcctgtta 413
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 554 gtgtgtgtgtgtgtgtgctcaagttcctgaggcttttccttcctctctgcattcctgcta 613
Query: 414 atcagaggccctggcatggctgctgcctgtagtcatggcaacgaacagctgattcctagc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atcagaggccctggcatggctgctgcctgtagtcatggcaacgaacagctgattcctagc 673
Query: 474 ctctgataagagtcagggctgaactttgtaaaaaaaaaaaaaaaaaaaaaaaaaaaactc 533
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 674 ctctgataagagtcagggctgaactttgtaaaaaaaaaaaaaaaaaa----------ctc 723
Query: 534 tctaagatgcctgg 547
||||||||||||||
Sbjct: 724 tctaagatgcctgg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
