BAC Information

Click to search

BAC

Clone NameMSMg01-085B14
Chromosome5 (Build37)
Map Location 31,791,783 - 31,792,068
singlet/doubletsinglet
Overlap genenone
Upstream gene1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik
Downstream geneXab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085B14.T7 (MSMg01no085_b14.b1)MSMg01-085B14.TJ (MSMg01no085_b14.g1)
ACCAG304779AG304780
length1,2301,262
length of high quality
(start - end)
287 (122 - 408)187 (120 - 306)
definitionCHROMAT_FILE: MSMg01no085_b14.b1 PHD_FILE: MSMg01no085_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:24 2005CHROMAT_FILE: MSMg01no085_b14.g1 PHD_FILE: MSMg01no085_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCCAGAC
AGCCTCAGCTCCTTTAAGAGACCCTGTCTTAAAAAGAAAAGGAAAAAATT
TCCCTTAGAAAGAATCCCGTATCTCTCCCACCTCCTTAAAGGCAGTACTT
CAGATATTTACCTCGATGCGAACCTCCTAACTCTCTCTCATCCCTAGACA
TTTCTTCCTCTCTGGAGCAAGCGGACCCACTGTGTGCTCGGATGTAAATG
CTCCCACTGTGTGTTCAGACGTGGAGTCAGCATCATCATTTTCATGGTTT
CTCTGGCTTCAGGCCTCTCTGTATCTCTTACCAGCTTCACCTTTCCCTCC
TTTCCCCAAATTCTCTGATCACTCACCAGCATACTTTTTTATTTTTTGAT
TTCACGTTTAGTAAACACGCATGCATGTGGACGCGTGTACCCTGGTGCTC
ACGTGCAGTGGAGAGGACCACTGTTACGAGTTTCCCTGTGTCGTGGTTAG
ATAGCCCTGGGGCTATGTTTGACGTTCATTCCTTTCTCGTGTGATGGGTT
GTGTTCAAGGACTGAATCTTCTTTCATTTTTAGGCTATTTTTTGTTTCTC
CGCTTCCCACCTTATTTTGTTTAATAAAGGTTAGTCGATGATTGTTTACA
CCTTTGTTTTGTGTAGTGTATGTTCTTACTTTTTTTTATCTTTCCCTTTT
TTTTTTTTTTCCTATTTTTATTTTTCTTTTTTTTTTTATTTTCTTCTTCT
TTTTTTTCTCTTTTTTTTTTTTCTTTTTTATCCCTTTTTTTTGTTCTTTT
TCTTTCTTTTTATTTTTTTTTTTTTTTATTTCTTGTACTGTTTCATTTCT
ATTTATTTTTTTTTTTTTTTTTTTTTCTTTCTTTTCTTCTCTCCTCTTCT
TTTTTATTTTTTCTTTTTCTTCATTCTCTTTTTCTTTTATTTTTTATTTC
TTTATTTTTTATTCTTTCTTTTTATTTCTAATCTTTCTTTTCTCTTTTTT
CTCTTCTTTCTATTATTTTTTTATTTTTCACTTTTCTCTTTTTCTTTATT
CTTTATTACTTCCTTATCTTCCATGTTTATTTTTGTTTTTTTCTCTTTCC
TCTTTTTATTTATCTATTTATTTTTCTTCCCTTTATTCTTTAATTATTTT
ACTATTCTTTCATTACTATTACTTGTCCTTTCTCTCTCTCTGTCTATTAT
TAGCCTTTATTTATTCTTTNTATTTATTTG
TTTTTCAAGTGAGCTGGGGCGCCGGNCTCGACXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCCTTAAGAGTGTGTGGGGGGGGGCAGGAGAATTGCTAAT
CCCTTTACGGTTACCCCTCTGAGAACAGCTAATATTGTTTTGGTAGCTTC
AGGCTTAATCATTTTGACCACTAAAACTATGTTTCTACTTTTGTTTAGTC
AGCCAGCTTCCTTATCTGGCTCTGTACTTTGCCTGTTAGTTCAGTTTGGA
AAGTCCTTTTCGAAGGGTGAAGGTACTGCTTGATCTTGAATTCTTTTTGG
ATATTACAGTGCAAGTCTTTGTCTTATTAACCTTCCTAAGATTCTTTGAT
TGATTCCCAACTATTTATGATCTTTGCCATTCTGTAATTTTTTTTTTTCC
CATATTATCCTGTACTGTGTTTATGCTTGATCAATTTTTCCCCTTGTTTA
CCCCCCTCTGATATGTTTCTTTTGTCTATTCCTAAATTATTTTTTGTTTT
TTTTTTTTTTCTTTTTATTTTGTTTAATTCTTTTCTTTGCTTTTTTTTTT
TTTTTTTTTTTTTCATTTATTTTTTTTTTTTCTTTCCTTTTTTTTTTTTA
TTAATTTTTTTTTATTTTTTCTTTATCTTTTCCTTTTTATTTCTCTTTCT
CTTTTTTTTTTATTCTTTTCTTTCTCTTTTTTATTTTTCTTTTTATTTTT
TTATTCTTTTTTCCTCTTTTATCCTTTCCTCTATTTTTCCCCTTATCTTT
CTTCTTCTCTTATTTTTTTTCTTTTTTTTTCTTTTTTATTTTTTTTTTTT
TTTTTTATTTTTTTTAATTCTTTCTCTTTTTTTCTTTTCTTACATATCTC
CATTTCTTTCTTATATTTGTTCTCTTATTTCTTTATCTTTTCTTTTTCTT
TTTTTTTTCTTCTCATCTCTTTTTTATACTTTTTATTTATTTTATTTTTT
TTTACATTTACTTTTTTTTTCTTTTTATTTTTCTTCTTTTTTTCTCTCTC
TCTTCTTTTTCTTATTTTTTTCTATCTCTCTTTTCGTTTCTCTCCCTTTT
TTCTCTTTCTTTTTTTTTCTTCTCTTTCTATCTTTTTTATTTTTATTTTT
ATTTTTCCCCTCTTTTTTTTTATTCTTTTATCTTTTTATTTTTTCTCTAT
CCCTCTTTTTTTTCTCCTCTCTATNCTTATTTCCTTCATTCTCTTTCTCA
TTATTTTATTGTTTAATTTTATTATCTCTTACTCTTTCTTTTCATCTTCT
TAATTCCTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_b14.b1 MSMg01no085_b14.b1 CHROMAT_FILE:
MSMg01no085_b14.b1 PHD_FILE: MSMg01no085_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:24 2005
         (287 letters)



>mm_chr5_31791583_31792268
          Length = 686

 Score =  447 bits (231), Expect = e-130
 Identities = 273/287 (95%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcccacctccttaaaggcagtacttcagatatttacctcgatgcgaacctcctaac 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 486 tctctcccacctccttaaaggcagtacttcagatatttacctcgctgcaaacctcctaac 427

                                                                       
Query: 61  tctctctcatccctagacatttcttcctctctggagcaagcggacccactgtgtgctcgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 426 tctctctcatccctagacatttcttcctctctggagcaagcggacccactgtgtgctcag 367

                                                                       
Query: 121 atgtaaatgctcccactgtgtgttcagacgtggagtcagcatcatcattttcatggtttc 180
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 366 atgtaaatggtcccactgtgtgttcagacgtggagtcagcagcatcattttcatggtttc 307

                                                                       
Query: 181 tctggcttcaggcctctctgtatctcttaccagcttcacctttccctcctttccccaaat 240
           ||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 306 tctggcttctg-cctctctgtatctcttaccagcttcaccttcccctcctttccccaaat 248

                                                          
Query: 241 tctctgatcactcaccagcatacttttttattttttgatttcacgtt 287
           |||||||||||||| |||||||||| ||||   | ||||||||||||
Sbjct: 247 tctctgatcactcatcagcatacttctttaaaatgtgatttcacgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)