Query= MSMg01no085_l06.b1 MSMg01no085_l06.b1 CHROMAT_FILE:
MSMg01no085_l06.b1 PHD_FILE: MSMg01no085_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:49 2005
(560 letters)
>mm_chr5_84118330_84119287
Length = 958
Score = 903 bits (467), Expect = 0.0
Identities = 497/507 (98%), Gaps = 3/507 (0%)
Strand = Plus / Minus
Query: 50 attagcctccttagaattaaaaatgaaaagccatgctaacataaagataccttactgact 109
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 958 attagcctccttagaattaaaaatgaaaag-tatgctaacataaagataccttactgact 900
Query: 110 tcttaagcaattataggcacaaaacagttcaagaatggtatatattaaaattattgtagg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tcttaagcaattataggcacaaaacagttcaagaatggtatatattaaaattattgtagg 840
Query: 170 cttgaaattgtagacgctagctttccatagtggaattattgcagccagtgaggtttatct 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 cttgaaattgtagacgctagctttccatagtggaattattgcagccagtgaggtttatct 780
Query: 230 gaggcatggttattgctaattgaaattatagatgctgtccaattgttttatagtatttta 289
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaggcgtggttattgctaattgaaattatagatgctgtccaattgttttatagtatttta 720
Query: 290 cccacacctttttcaaaaggacttccagaaaatattagtcagtctgtttatttctgttcc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cccacacctttttcaaaaggacttccagaaaatattagtcagtctgtttatttctgttcc 660
Query: 350 tcctttatatagaatttacaaggttaagtaccataatcataaatgccccttcaattgtgc 409
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 659 tcctttatatagaatttacaagg-gaagtaccataatcataaatgccccttcaattgtgc 601
Query: 410 taaacattcataagttaaaataaaaattgatatatattgtgcaacagcgctcaagatagt 469
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 600 taaacattcataagttaaaataaaaattgatatatattgtgcaacagtgctcaagatagt 541
Query: 470 tacgaagctttctgaccacaagctaggtatcattcgtccttttaaattggtcattgaaca 529
|| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 540 tatgaagctttctgaccacaagctaggtatcatt-gtcattttaaattggtcattgaaca 482
Query: 530 agttcaattactttttcctgtgtttaa 556
|||||||||| ||||||||||||||||
Sbjct: 481 agttcaattattttttcctgtgtttaa 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 958
Length adjustment: 10
Effective length of query: 550
Effective length of database: 948
Effective search space: 521400
Effective search space used: 521400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no085_l06.g1 MSMg01no085_l06.g1 CHROMAT_FILE:
MSMg01no085_l06.g1 PHD_FILE: MSMg01no085_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:49 2005
(479 letters)
>mm_chr5_84055656_84056534
Length = 879
Score = 833 bits (431), Expect = 0.0
Identities = 471/493 (95%), Gaps = 14/493 (2%)
Strand = Plus / Plus
Query: 1 gtaatcagagtattgcaggatctcaggaaacaatattgatttaagtttgaggtcagctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gtaatcagagtattgcaggatctcaggaaacaatattgatttaagtttgaggtcagctta 246
Query: 61 tgctacaaaagactatgtatcaaaaacagcaaaaataataataacaaatgtttaatgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgctacaaaagactatgtatcaaaaacagcaaaaataataataacaaatgtttaatgaga 306
Query: 121 gcacatatctaaaattcaagatctggaaaagtagtctggagttcaaggttaaccactctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcacatatctaaaattcaagatctggaaaagtagtctggagttcaaggttaaccactctt 366
Query: 181 gctctatatcaaataaaagggttctaagagactttgtgtcaaaatgcaagaataga---- 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 367 gctctatatcaaataaaagggttctaagagaccttgtgtcaaaatgcaagaatagataga 426
Query: 237 ----------gagagagagagagagagagcgagagagagagagataagcttatgagaagc 286
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 427 gagagagagagagagagagagagagagagagagagagagagagataagcttatgagaagc 486
Query: 287 ctgtgcacatagctcaatgactaagaacttggttaggtgtgatataggatggaatttatc 346
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 487 ctgtgcacatagctcaatgactaagaacttggttaggtgtgggatacgatggaatttatt 546
Query: 347 accacatattgcaaagaaaaccaaaaacagaagccatagacattaccaaaggaaagtaac 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 accacatattgcaaagaaaaccaaaaacagaagccatagacattaccaaaggaaagtaaa 606
Query: 407 taaatgcatgaccatcaaagaaattgattccattctcctctatggtgccacagttgtccc 466
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taaatgaatgaccatcaaagaaattgattccattctcctctatggtgccacagttgtccc 666
Query: 467 catgccatatctc 479
|||||||||||||
Sbjct: 667 catgccatatctc 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
