BAC Information

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BAC

Clone NameMSMg01-086G02
Chromosome5 (Build37)
Map Location 26,492,738 - 26,493,005
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689
Downstream geneLOC664837, 4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086G02.T7 (MSMg01no086_g02.b1)MSMg01-086G02.TJ (MSMg01no086_g02.g1)
ACCAG305708AG305709
length708763
length of high quality
(start - end)
269 (47 - 315)303 (132 - 434)
definitionCHROMAT_FILE: MSMg01no086_g02.b1 PHD_FILE: MSMg01no086_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:06 2005CHROMAT_FILE: MSMg01no086_g02.g1 PHD_FILE: MSMg01no086_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTAATTCGAGAGGATCCGCGGAATTCAGTGGCATTGCTGAAGATGGT
GACAGCAATTTCATCTTTTTGCAATTGCTGGGACTTCCTGTAATCAAGTC
AAATCCCTTGAAGTTCCAGAAGCTGGAGGACAGGCCTAGGAAGCCAGCAG
CGGCTCCTCTTCATACTCTTCTTCCTTCGCAGTCCATGGCACTACTGCTC
TGCCCACTTGGTGTCTAGGTGTAGAGAATAAATGTAAGCAATATAAAAGA
AAAGGCCAATGTATCCCAGTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGCGCGTTACTCCTTTTCTTTTCTTACTCTATCAATTC
ATTTTTAACTACACCCCTCCCCTCTACACCTCCCCCTCCCTTCTCCCTCC
TCTTTTTCCCCCCCTTTTCCCTTTTTCCTCTTCTCCCCTTTCTTTCTTCC
CTTTTCCCCTTCTATTTCTCTCCCCCCCCCTCTTCCCCTTTCTTCTTTCC
TCTCCTTTTATCCCCTTTTCTTCCTCTTTTATCTTCCCCCTTCTTCCCGC
TTTTTCCCCATCTTTCATGTCCCCCTTTTCTCTCCCCGCCCTCCTTTCTT
ACCCCTCCCTCCTTCACTTTTCCTTATCCCCTCCTCTCCCTCTCTCTCTT
CCTCCTTTACTTCTCTCTCATTTCCCCTTCTTTTCTTTTTATTTTATTAT
CCCGCCAC
NNNNNNNNNNNNNNNCCCCCCCCCCNNCCCTCCCCCCCTNCCTCCTTCCT
CCCTNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGACACCATGGATGCAGT
ATGGCAGTGATTACATCATCAAGTGTGTGTCCATGGGGTAAGTAAAATTA
TGGACACAAAAGATCATCACCTTGTATACCCCTAGGTGGCTAGGCTATGA
CTTTACTATACAGCCCTGGCTGCCTGGAACTTACAAAGATCCATCCCTGG
ATGTGAGTTCTAGGTCTACAGCAGGGGATAGAACACCTGAATAAGGAAGC
TTGTCTCAAGAGTCACTACTTGCAAATCAATTTTTCTGCATAAGAAACAG
AATTTTTAAATATAGGTTTTAAAAGTTCAATTAATATAGAGATAAAGGCA
AAAACCAACAATGAAATACAAGAACAAGAACATATAACTTCTAAATAACA
TAACAATAACTCACAGAACAAAAATGAAAACTTCAACCAATACTCTATCG
GAAAATTATTGTTCAGCAGCTTTTTTCTGCACTTTTAGCAGCACAGCCCT
CCAGTCTGCTGTTCCTCTTGTACACTTGCTACCAGTGCAACCGCCTCAGT
TCTCTACCAAGAATCCGTTGCCTGAATAGAAGAGGCAACAACCGCTCTGT
ATCACCTTGCTTTTCTCGGCAGGGCCCTATTCTCATGAATGCTCTTGCGC
CTAAATAAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_g02.b1 MSMg01no086_g02.b1 CHROMAT_FILE:
MSMg01no086_g02.b1 PHD_FILE: MSMg01no086_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:06 2005
         (269 letters)



>mm_chr5_26492580_26493248
          Length = 669

 Score =  464 bits (240), Expect = e-135
 Identities = 261/268 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgacagcaatttcatctttttgcaattgctgggacttcctgtaatcaagtcaaatcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tggtgacaacaatttcatctttttgcaattgctgggacttcctgtaatcaagtcaaatcc 367

                                                                       
Query: 61  cttgaagttccagaagctggaggacaggcctaggaagccagcagcggctcctcttcatac 120
           ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct: 366 cttgaagttccagaagctggaggacgggcctaggaagccagcagccgctcttcttcatac 307

                                                                       
Query: 121 tcttcttccttcgcagtccatggcactactgctctgcccacttggtgtctaggtgtagag 180
           ||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct: 306 tcttcttccttcgcagtccatggcactactgttccgcccacttggtgtctaggtatagag 247

                                                                       
Query: 181 aataaatgtaagcaatataaaagaaaaggccaatgtatcccagtcctgtgtgtgtgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aataaatgtaagcaatataaaagaaaaggccaatgtatcccagtcctgtgtgtgtgtgtg 187

                                       
Query: 241 tgtgtgtgtgtgtgtgtgtgtgtgtgtg 268
           ||||||||||||||||||||||||||||
Sbjct: 186 tgtgtgtgtgtgtgtgtgtgtgtgtgtg 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)