BAC Information

Click to search

BAC

Clone NameMSMg01-086K05
Chromosome5 (Build37)
Map Location 138,223,172 - 138,223,456
singlet/doubletsinglet
Overlap geneBcdin3
Upstream geneEmid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik
Downstream geneZcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086K05.T7 (MSMg01no086_k05.b1)MSMg01-086K05.TJ (MSMg01no086_k05.g1)
ACCAG305894AG305895
length1,579722
length of high quality
(start - end)		---286 (59 - 344)
definitionCHROMAT_FILE: MSMg01no086_k05.b1 PHD_FILE: MSMg01no086_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:27 2005CHROMAT_FILE: MSMg01no086_k05.g1 PHD_FILE: MSMg01no086_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTCTTTTTTTNNNNTTTTTTNTTTNNTATTAATTTTTTTNTNT
ATNTTTNNTTTTTTNNTTTNTTTNTTTAATATTTCTATTNTATACATAAT
AATAAATATATCATAGTAAACGCAATAAAACACCGATAATCAACATATCA
CAGACACTATAGAGAAGCACAGTATATATCATTCTCTATATCCTCGTACT
CTTCCTCCCTATCNCGACATCTACAGCACACCTACGCTCTACAGCGACTA
CGCACATACGCATCGAGCGTACACACAGACAATACACACANNTTGAAAAC
ATCACGCCAACGCCATAATACATCATACTTCACTATGTAGCTCGCTGCTC
ACTCTGCTTCATGTTACTTCTGCTCTCGTGCATCTCGTCGCGCCGCGCGN
CGCGCCGCGCTGCTAGCGCACACTCACCAACTAGCCACTTCTCTCTCACA
CGTACCTCTGCTCTCTTCATCTGCTCTCCGCAGCGCCGCGCGTAGCGCTT
ATCTTGTCGCATCACTTCTGNGTATACTGTCAACATGAGCGCACGAACAC
TACATAGTATAATATCGGCGCNTAATGAGCGCGATGACTNCGGCGCGGCG
ATGAGTACTGAGATGTGATAGTTGCTGTACTGCTTGGCTATTCGCTACTG
TGTTGTATACGAGCAGCGTCTTATGTTGTGCGTGCACTTGCTCTGTGATC
GTCGCGCACGTGGTGCTACAGTCGTGCGATAGCTGTNTATCATAGTCTAC
GTCGCGTGCGNATGCACGAGTATNCGCACGTTGTGTAAGCGTCGCGCCAG
TCTCCTGCTACGAGGTGTTATGTATATATGCTTNGCTGTACATACTTGTG
ACGTATCGTCCGCTCGACCNACTCTTGTCGTGAGTTTGCGCCTCTATGCA
CATGCGAGTAACGTCAGCCGCGGCGCGACGATAGCGGCGTCGCGTAGAGC
CTACGCATAGCGCAGCTGCTAGACTGAGTGAGCTAGCTAGTTAATAGCGG
TCACGCCGGACGCGTCGAATGCGATAGTAGATCGGCGCGCGCGCGATCAA
ACACAGACAGATATACATGAACAGCGTATGAGCTGCAGTACAGCTCGCGC
TGCTCGACGGAACGGCGGATGCGATGAGACACATCACTCGACATGACATC
ATGATAGTATACGACACGATAGAATAGGACGAAGCGCATACAGACTACAT
CGATTACATGTAGAGATACACTAGAGAGTATCTGGACGCGACGTGTGTGC
ACTGCCTGCATCATCGTGCACGCACGATGCCNGCNCTCACGTCACGATNG
CTGTCGAGCGAGCTCATGCGCGCCNGGCGGCATCGCACGTGCGTTGTGTT
GTACCTATTCGTNCCTACGTAGCGCAGTGTCTGTGANCGCGTGTGTCGAT
GNCGCGCGGGGACGCGGNCTGCTCGCTCTAGTTGATCGCTCTNCTANTCA
CGCTGATCTGTAGTGCTCAGCGGTCTGTGTGTCAGTCATCNCGATCANCG
GNCGGTCGTATTCAGTCGTCACATAGCTTGTCTCGCGATCGTCANCTATG
CTGCTACCGTCCGTATATNGTAANTCGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCATCAGCTTCCTCTCCTAGCCCGCTGGGCTGGATGGCATGGA
CTGTTTGCTGACTCTGCCCACCTGGGACAGGGGAAGGGGGAATGTCGAGT
TCTCCAGGCCCTTCCTCCTGTTCTCAGGGGACTTCCCGCTTCTCCTCAGC
CTTTGTTCCTAGCTGCACTTAAATGGACCATGGATGGACTAAGGGTGTTA
GAGGGGAAGTTTGGTAAGGAGACACACAGGTACTGTGAAAGTCCTTTTGC
TGTCCCCCGGTTGTGAGGGAGCTGGGTTTGGAAATGTGAGAACAGCACAT
TAAACTTGACAACTAGGGCAGTGGCCCCCGCACCTGTGTCCAGCACTTTC
TAGTGCCAGTATCTCCGAGTATTACTATTGTCCTCCCTTTGCCCGTCCTA
GTCCCTCTATGGTGGTTTCAATTGTACATATATTACTCACCATTCTTCCC
GTTACAAATATTTTGCATCTATCATTGTCTTACACTCTACTTTATTCCTG
TTCTTTATTCTATAATCACTCCTATTTTCTCTACCCCCTCACCATCGTAC
ACTTCTAAAAGACAATTACAATACATCTCTAGCTCTATATATCTTCTCTT
ACATCTCTTCTTATTCTTAAACTATCTTACCTTCTCTTTATTATTGCCCT
CCTCATCCCTCTCTTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_k05.g1 MSMg01no086_k05.g1 CHROMAT_FILE:
MSMg01no086_k05.g1 PHD_FILE: MSMg01no086_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:27 2005
         (286 letters)



>mm_chr5_138222972_138223656
          Length = 685

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcagcttcctctcctagcccgctgggctggatggcatggactgtttgctgactctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 catcagcttcctctcctagcccgctgggctggatggcatggactgtttgctgactctgcc 426

                                                                       
Query: 61  cacctgggacaggggaagggggaatgtcgagttctccaggcccttcctcctgttctcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cacctgggacaggggaagggggaatgtcgagttctccaggcccttcctcctgttctcagg 366

                                                                       
Query: 121 ggacttcccgcttctcctcagcctttgttcctagctgcacttaaatggaccatggatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggacttcccgcttctcctcagcctttgttcctagctgcacttaaatggaccatggatgga 306

                                                                       
Query: 181 ctaagggtgttagaggggaagtttggtaaggagacacacaggtactgtgaaagtcctttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 305 ctaagggtgttagaggggaagtttggtaaggagacacacaggtactgtgaaagtccttct 246

                                                         
Query: 241 gctgtcccccggttgtgagggagctgggtttggaaatgtgagaaca 286
           ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 245 gctgtcccccggtgg-gagggagctgggtttggaaatgtgagaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |