Query= MSMg01no086_k06.b1 MSMg01no086_k06.b1 CHROMAT_FILE:
MSMg01no086_k06.b1 PHD_FILE: MSMg01no086_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:28 2005
(243 letters)
>mm_chr5_96543568_96544209
Length = 642
Score = 453 bits (234), Expect = e-132
Identities = 240/242 (99%), Gaps = 1/242 (0%)
Strand = Plus / Minus
Query: 1 tgtttcgcctttagaactaggttctttttcttttattcctaccatgacaaatttgttcct 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tgtttcgcctttagaactaggttctttttcttttattcctaccatgataaatttgttcct 382
Query: 61 ttcagaattttatttatgccttatttccactgtaactttcttactgttagagctttgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagaattttatttatgccttatttccactgtaactttcttactgttagagctttgtct 322
Query: 121 ctgtctgattgttctagttctactttttttcatgcccagatattgtgtctctttgatcta 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtctgattgttctagttctac-ttttttcatgcccagatattgtgtctctttgatcta 263
Query: 181 tgctaatggctgagacctaagagctttttactttacttgacttactatgctttttaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgctaatggctgagacctaagagctttttactttacttgacttactatgctttttaatat 203
Query: 241 cc 242
||
Sbjct: 202 cc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space: 148122
Effective search space used: 148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no086_k06.g1 MSMg01no086_k06.g1 CHROMAT_FILE:
MSMg01no086_k06.g1 PHD_FILE: MSMg01no086_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:28 2005
(386 letters)
>mm_chr5_96362800_96363585
Length = 786
Score = 665 bits (344), Expect = 0.0
Identities = 372/386 (96%), Gaps = 8/386 (2%)
Strand = Plus / Plus
Query: 1 acagccagggctgttacacagagagaccttgtcttgagaaacaaacaaacaaacaaacaa 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 209 acagccagggctgttacacagagagaccttgtcttgag--------aaacaaacaaacaa 260
Query: 61 caacaatgaatagttagctttcctcacacctaagactagagatgtattttatgagactta 120
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 cagcaatgaatagttagctttcctcacacctaagactagagaagtattttatgagactta 320
Query: 121 caacagctgaaagacatgattctgtcacatttattagatggagtgtgtgtgttgtatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacagctgaaagacatgattctgtcacatttattagatggagtgtgtgtgttgtatggg 380
Query: 181 aatgcaagggaaaggtctgtattacctccttctccgatgttcaggaatctgctgtgcatt 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 aatgcaagggaaagatctgtattacctccttctccgatgttcaggaatctgccgtgcatt 440
Query: 241 aggatgtctgttctctgaagctcaatagactgactctcttgtcttttgcttctctagggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggatgtctgttctctgaagctcaatagactgactctcttgtcttttgcttctctagggg 500
Query: 301 aaataacaagcgtctttgggacgtgtgtagcttctgtccctccagttatcatacacataa 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaataacaagcatctttgggacgtgtgtagcttctgtccctccagttatcatacacataa 560
Query: 361 tcaagagctcaagcatctccccacgg 386
|||||||||||||||||||||||||
Sbjct: 561 gcaagagctcaagcatctccccacgg 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
