Query= MSMg01no087_d03.b1 MSMg01no087_d03.b1 CHROMAT_FILE:
MSMg01no087_d03.b1 PHD_FILE: MSMg01no087_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:13 2005
(486 letters)
>mm_chr5_107299957_107300841
Length = 885
Score = 911 bits (471), Expect = 0.0
Identities = 480/483 (99%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcttttatcgattcatatttttcaaaatagggtgatagttgggtaacaaatta 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaattctcttttat-gattcatatttttcaaaatagggtgatagttgggtaacaaatta 627
Query: 64 tttgattagtttttgtatgcattattcctcttcatgtgtacttcacttctagggccaatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttgattagtttttgtatgcattattcctcttcatgtgtacttcacttctagggccaatg 567
Query: 124 tctagaaaagaacagtgatgtgtggaaatccacagacttgataaagcagagcagagcgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tctagaaaagaacagtgatgtgtggaaatccacagacttgataaagcagagcagagcgaa 507
Query: 184 agtgaactttttctttaattttgtattatgagtgattttaagcatacactgatgtagaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtgaactttttctttaattttgtattatgagtgattttaagcatacactgatgtagaca 447
Query: 244 gaagtgtgtaatgattctagtactcactagcttccttaaacaagaagcaacttatagctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaagtgtgtaatgattctagtactcactagcttccttaaacaagaagcaacttatagctt 387
Query: 304 ttactatgttcccaataccttgtttcagttttctctttttatattctgaagcaaaattgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttactatgttcccaataccttgtttcagttttctctttttatattctgaagcaaaattgt 327
Query: 364 aagtaagtctgtaaacaataaatatttttaaagctataccgtacacataaaaactaatgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagtaagtctgtaaacaataaatatttttaaagctataccgtacacataaaaactaatgt 267
Query: 424 catacattactgagttgatgttggaattactgcctcatatgctatataagacattgtata 483
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 266 catacattactgagttgatgttggaattactgtctcatatgctatataagatattgtata 207
Query: 484 aga 486
|||
Sbjct: 206 aga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no087_d03.g1 MSMg01no087_d03.g1 CHROMAT_FILE:
MSMg01no087_d03.g1 PHD_FILE: MSMg01no087_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:13 2005
(363 letters)
>mm_chr5_107197325_107198087
Length = 763
Score = 659 bits (341), Expect = 0.0
Identities = 361/375 (96%), Gaps = 12/375 (3%)
Strand = Plus / Plus
Query: 1 ttcagccaggcatggtggtgcacgcctttaatcccagcacttgagaggcagaggcaggca 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcagccgggcatggtggtgcacgcctttaatcccagcacttgagaggcagaggcaggca 248
Query: 61 gatttctgagttcgaggccagcctggtctacagagtgaattctggaatagccagggctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gatttctgagttcgaggccagcctggtctacagagtgaattctggaatagccagggctac 308
Query: 121 acagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaa------------aggcaaca 168
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 309 acagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaagaattcctcagaaggcaaca 368
Query: 169 cctttgtcagggctagcatggtcttgataaggactagtagagacagatgacattagaagc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cctttgtcagggctagcatggtcttgataaggactagtagagacagatgacattagaagc 428
Query: 229 ggaagtgggtgacatttataaaagaataaaggacacaaattgtgtttagttcttagatag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggaagtgggtgacatttataaaagaataaaggacacaaattgtgtttagttcttagatag 488
Query: 289 tgtgcagcttaaggaaaagaaatgctggatccctatgtttatcaaggagaatgacttaag 348
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgtgtagcttaaggaaaagaaatgctggatccctatgtttatcaaggagaatgacttaag 548
Query: 349 gatttcattggttgt 363
|||||||||||||||
Sbjct: 549 gatttcattggttgt 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
