BAC Information

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BAC

Clone NameMSMg01-087H09
Chromosome5 (Build37)
Map Location 82,532,337 - 82,667,326
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087H09.T7 (MSMg01no087_h09.b1)MSMg01-087H09.TJ (MSMg01no087_h09.g1)
ACCAG306484AG306485
length705705
length of high quality
(start - end)
246 (68 - 313)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no087_h09.b1 PHD_FILE: MSMg01no087_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:36 2005CHROMAT_FILE: MSMg01no087_h09.g1 PHD_FILE: MSMg01no087_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,667,081 - 82,667,326)(82,532,337 - 82,532,621)
sequence
CACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATTATCTCCAGAGCTGTCCTAAGTTTCCAATTACTGCTAAACTA
AACTCAATGCGTGTTTCCTTGCGAATACCCTTCCTTCTTCCATTCCTTTT
TATTTTGTAATTAAAATTACAATGAAACTATGATTCCATATGACTCCTGC
TGTACATAATCTCAATACTGTTAAACTCCTATTTAATTCTCAGTTTTAAA
AAAAAGTTGCAATAAAATCTGTACCCCAAAGTTATCTTCTTGAAACCCCA
CATGATGGTAGAAAATCAATTTGTTGACCTTTATGTAAAATCTATGCCAT
AGCAGGGTGGTCGTTGTTATGATTAAGGCTCTCCTGTTGTGTCATTTCCA
TGAAGTATGATTTGGATTGAGCTGTTTCACTGAGGCTTTCTTCTCATTAT
GATATAACCCACTCTTTCCCATCTCCTTATATGTTAGTGCCTTTCATATA
TCTAAAGTATTGTCCGTTATATCTAATGTATTTCTTCATTATGAACCCCA
TTCTATTGCTGACACCCATTATTATATATACTCCCTATTTTTTCCTAAAA
CCACCCATACCTTTTTCCCTCCTTTGCGAAATGTATGCCTGTTCTTCGTT
GTCCCGCATTAACACTGTCCCACTTACACATAATCTTCCATTTTCCCACC
CCTCC
CCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTTTCTCCCCACCCCCTTTTGCAA
TGGCTGTAGTGATTTAATTCCAAGTCACCTGGGGTTTTAAGAAAGAAAAT
CCTTCCCATTAAAGCTGCATGGTGTTTATGACCACCACAGGGATGATTTA
AAAAACAATGGAGAAGGTTGACATATTAAAAATAAAGCCAGCTAATTACA
GTAAATGGGCTTAATTTAAAAACCACAGGTGCCTCTTTTATAAGCTTTCC
TTGAGTTTTTACCCATAATGGGTTTCCAGGTCATTGGACAGCACTGAAGT
CTTTGCTGTTTCCAGCTTTTACTGGAAAACATTTGGCTCATTTCTACCCA
CAGTCCATACTTACTATGATGTCATATAAAATGTAACATCCCTGAAAGCT
TGTTCCTGCATCTAAGAGTATTGTATCTAAACCACTATTTGTAAAATTTA
CATAATATAATACCAAATTACGTCTCCTTTGTTAGACGTTTTTAAGTAGA
TTTGTAATAGATTTCTTCTTGGCACCTTATATTATTTTACTTTCACAAAT
CGACGACCCCAATATTACCAATTTTAGGGACAATACTTTTGCTAAATAGC
ATTTATTACAGAACATTTCCAGAGCCCTAAATATAACACGCACATACATC
TTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_h09.b1 MSMg01no087_h09.b1 CHROMAT_FILE:
MSMg01no087_h09.b1 PHD_FILE: MSMg01no087_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:36 2005
         (246 letters)



>mm_chr5_82666881_82667526
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgtcctaagtttccaattactgctaaactaaactcaatgcgtgtttccttgcgaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 446 agctgtcctaagtttccaattactgctaaactaaactcaatgcgtgtttccttgggaata 387

                                                                       
Query: 61  cccttccttcttccattcctttttattttgtaattaaaattacaatgaaactatgattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cccttccttcttccattcctttttattttgtaattaaaattacaatgaaactatgattcc 327

                                                                       
Query: 121 atatgactcctgctgtacataatctcaatactgttaaactcctatttaattctcagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atatgactcctgctgtacataatctcaatactgttaaactcctatttaattctcagtttt 267

                                                                       
Query: 181 aaaaaaaagttgcaataaaatctgtaccccaaagttatcttcttgaaaccccacatgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaaaaaagttgcaataaaatctgtaccccaaagttatcttcttgaaaccccacatgatg 207

                 
Query: 241 gtagaa 246
           ||||||
Sbjct: 206 gtagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_h09.g1 MSMg01no087_h09.g1 CHROMAT_FILE:
MSMg01no087_h09.g1 PHD_FILE: MSMg01no087_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:36 2005
         (286 letters)



>mm_chr5_82532137_82532822
          Length = 686

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttctccccacccccttttgcaatggctgtagtgatttaattccaagtcacctgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ttctttctccccacccccttttgcaatggctgtagtgatttaatttcaagtcacctgggg 260

                                                                       
Query: 61  ttttaagaaagaaaatccttcccattaaagctgcatggtgtttatgaccaccacagggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttaagaaagaaaatccttcccattaaagctgcatggtgtttatgaccaccacagggat 320

                                                                       
Query: 121 gatttaaaaaacaatggagaaggttgacatattaaaaataaagccagctaattacagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gatttaaaaaacaatggagaaggttgacatattaaaaataaagccagctaattacagcaa 380

                                                                       
Query: 181 atgggcttaatttaaaaaccacaggtgcctcttttataagctttccttgagtttttaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgggcttaatttaaaaaccacaggtgcctcttttataagctttccttgagtttttaccc 440

                                                        
Query: 241 ataatgggtttccaggtcattggacagcactgaagtctttgctgt 285
           |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 441 ataatgggcttccaggtcattggccagcactgaagtctttgctgt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)