BAC Information

Click to search

BAC

Clone NameMSMg01-087J11
Chromosome5 (Build37)
Map Location 43,437,414 - 43,627,248
singlet/doubletdoublet
Overlap geneEG665934, Cpeb2
Upstream geneLOC100040588, EG636612, LOC433883
Downstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087J11.T7 (MSMg01no087_j11.b1)MSMg01-087J11.TJ (MSMg01no087_j11.g1)
ACCAG306579AG306580
length697691
length of high quality
(start - end)
111 (80 - 190)255 (84 - 338)
definitionCHROMAT_FILE: MSMg01no087_j11.b1 PHD_FILE: MSMg01no087_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:46 2005CHROMAT_FILE: MSMg01no087_j11.g1 PHD_FILE: MSMg01no087_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,627,138 - 43,627,248)(43,437,414 - 43,437,667)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGG
AATTCAAAATTCCCCAACAATTTGCATGGCAAACTTGTAGTTAAAAAGAG
AAGAGTCCGACACACAAAAGACAGTTGCTCATATAAGCCATGGGAAATTG
TGTATTACTTCAAAAGTTGATATTTCCCCATTCTTGGGGCATAAAAGACA
TTCCAACAAATCTGTTAACTTTTGCTTGGGTTAATTTCGATAGACTGTTA
TTTGTGACGCTGGTTAATTTAATCAGCATCCATTCTTGAAAACTTTGGTC
AACATAAAAGTTATGATTTCATCCAGTTAACGTTCAATTTTGGTTCCACG
ACATTCTTTCATCTCGACACCGTATTTCGAATGATCACCATAATAAATGC
TATCCCCATTAACACGCCAAGTAAATTCTCAACATCAGCTAATTCTTCTT
CCACCCAAAATCTGCCTTGGCCGTATTTTGGTACGGGTGCATTAACACAA
CACATCCTGATTCTTATACGCAACATACCTACCCTACCCCCCGCTCGGTG
TCATTTCCCCGATACCCTATATCCCCCAATTTCGGAACACAACCATGACT
AGATATTTATTATCAACCCCCCTCTAATCCCACATTCATCGCTAACCCCC
TTTTTCTTTCTCCCAAGACCCTTCCTCCCCCATCTTCACCACAACCT
CCCACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATAGCCAACACAACGCCCAGCAG
AAACGGGCTTTCAAATATTTCTTTTACAAGTTCACACACAGAAACTTGAA
AGTGGATGCTTAGTCACCAAAATACAAGACCTTGTTAAACACAGAGACAT
CTCTAAAAAGAATGCCAAGAACTGGTAAATGAATGGATAGAGCTTGGATG
CATTACTGGAGTCCTTCTCTGCCCAGTTACACCCCTGGCTTAGGAAATCC
CAGTATCACAACATTATGAATTCAGTTTCCCTGCAGGTATGCTCTGTGAT
GGGACATAGACTCTAAGACTACCTATGCAGTCCCAACACCTGAATCTGAT
GCTTAAGACAGATGCTTCAGTAAATTCCTAATCCAAGCCTAAGTGATGAC
CTCAGACAGGAGTACATCATCAGGCCTGGAACTTGTTCCGCATCTACTTC
CCTGTGTCTGGAACTGTTCTCTCCCTTTAGTCCCTCAGCAGATCTGCAAA
ATATGATTAATCAGCTTGAACTTTTTGTCTCACGATACATGGTAAGATGC
GTCCTGCCAACCAAGCTAAACCTTTCTCTCACTGTTCCCCTTCAATTTGT
TTAAACCTCCCCTGCTTTTGTTGCCCGCCTCCACACTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_j11.b1 MSMg01no087_j11.b1 CHROMAT_FILE:
MSMg01no087_j11.b1 PHD_FILE: MSMg01no087_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:46 2005
         (111 letters)



>mm_chr5_43626938_43627448
          Length = 511

 Score =  215 bits (111), Expect = 8e-61
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacttgtagttaaaaagagaagagtccgacacacaaaagacagttgctcatataagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caaacttgtagttaaaaagagaagagtccgacacacaaaagacagttgctcatataagcc 252

                                                              
Query: 61  atgggaaattgtgtattacttcaaaagttgatatttccccattcttggggc 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgggaaattgtgtattacttcaaaagttgatatttccccattcttggggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_j11.g1 MSMg01no087_j11.g1 CHROMAT_FILE:
MSMg01no087_j11.g1 PHD_FILE: MSMg01no087_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:46 2005
         (255 letters)



>mm_chr5_43437214_43437868
          Length = 655

 Score =  453 bits (234), Expect = e-132
 Identities = 249/254 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacacaacgcccagcagaaacgggctttcaaatatttcttttacaagttcacacacagaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacacaatgcccagcagaaacgggctttcaaatatttcttttacaagttcacacacagaa 260

                                                                       
Query: 61  acttgaaagtggatgcttagtcaccaaaatacaagaccttgttaaacacagagacatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttgaaagtggatgcttagtcaccaaaatacaagaccttgttaaacacagagacatctc 320

                                                                       
Query: 121 taaaaagaatgccaagaactggtaaatgaatggatagagcttggatgcattactggagtc 180
           |||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |
Sbjct: 321 taaaaagaatgccaagaactggtaaatgaatggatagagcttcgaagcattattggagcc 380

                                                                       
Query: 181 cttctctgcccagttacacccctggcttaggaaatcccagtatcacaacattatgaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctctgcccagttacacccctggcttaggaaatcccagtatcacaacattatgaattc 440

                         
Query: 241 agtttccctgcagg 254
           ||||||||||||||
Sbjct: 441 agtttccctgcagg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)