Query= MSMg01no087_m02.b1 MSMg01no087_m02.b1 CHROMAT_FILE:
MSMg01no087_m02.b1 PHD_FILE: MSMg01no087_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:00 2005
(432 letters)
>mm_chr5_81385049_81385882
Length = 834
Score = 752 bits (389), Expect = 0.0
Identities = 418/429 (97%), Gaps = 4/429 (0%)
Strand = Plus / Plus
Query: 7 gaattctggctacttcgtgaaagggagagaggtacatttggctcatggctctgaaagtcc 66
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 207 gaattctggatactt-gtgaaagggagagaggtgcatttggctcatggctctgaaagtcc 265
Query: 67 acaatcaaattcttgtatcccctttgttttgggcttctggaattgagcacatcacataca 126
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 266 acaatcaaattcttgtatcccctttgttttgggcttctggaatggagcacatcacatata 325
Query: 127 atacttctcaagccagcaaggagagagagaagagaagggtctaaggcccaatcagccctt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atacttctcaagccagcaaggagagagagaagagaagggtctaaggcccaatcagccctt 385
Query: 187 ggatggcaggcttccagcccagcatgaagatgatacaactggtctcccctcttatgaaag 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agatggcaggcttccagcccagcatgaagatgatacaactggtctcccctcttatgaaag 445
Query: 247 ttgtatagcagttcctagtgtgctcctcctgaggactgaaactacaaggaatttttgcta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgtatagcagttcctagtgtgctcctcctgaggactgaaactacaaggaatttttgcta 505
Query: 307 ctgagaataaatcaaggttggtagaacaaagtgagttacacataaaatgatccgacaaag 366
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 506 ctgagaataaatcaaggttggtagaacaaagtgagttacacataacatgatccgacaaag 565
Query: 367 aaactctagccaacagcatcccagaatattgccctatagagaaaaaaa---ttaagaaat 423
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 566 aaactctagccaacagcatcccagaatattgccctatagaaaaaaaaaaaattaagaaat 625
Query: 424 ttcttagac 432
|||||||||
Sbjct: 626 ttcttagac 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 834
Length adjustment: 9
Effective length of query: 423
Effective length of database: 825
Effective search space: 348975
Effective search space used: 348975
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no087_m02.g1 MSMg01no087_m02.g1 CHROMAT_FILE:
MSMg01no087_m02.g1 PHD_FILE: MSMg01no087_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:00 2005
(437 letters)
>mm_chr5_81477797_81478633
Length = 837
Score = 748 bits (387), Expect = 0.0
Identities = 420/437 (96%), Gaps = 11/437 (2%)
Strand = Plus / Minus
Query: 1 catctaaaaatgaacaattaaaagtataatttttcccattttatgactacaatacaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 catctaaaaatgaacaattaaaagtataatttttcccattttatgactacaatacaattc 524
Query: 61 tcagagataagaactacttcatgataatatgagtgtcttaaggagaggaaggacacctcc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 523 tcagagataagaactacttcatgataatatgagtgtcttaaggagagggaggacacctcc 464
Query: 121 ctactcatctgcaagcaaggccaagacaaagaattatcaatttactcttacaatatgcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctactcatctgcaagcaaggccaagacaaagaattatcaatttactcttacaatatgcac 404
Query: 181 ttatgatgtgcctgttatgtgctaagttaaaattcagggaatacatttttaaagagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttatgatgtgcctgttatgtgctaagttaaaattcagggaatacatttttaaagagaaag 344
Query: 241 tatttcatggtcctttagaaatataaaatataaaatcacagactatgaaagtatttggct 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 343 tatttcatggtcctttagaaatgtaaaatataaaatcacagactatgaaagtatttggct 284
Query: 301 ctgaagagctaagacaccaaaaaagattttacatttccatttttctatttctctattgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctgaagagctaagacaccaaaaaagattttacatttccatttttctatttctctattgag 224
Query: 361 aacataacaacttccattcacttcagcttattctagaggtgatagtagcaaacaaacttt 420
||| ||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 223 aacgtaacaacttccattcactt--g---------gaggtgatagtagcaaagaaacttt 175
Query: 421 atatagtacgtacttta 437
|||||||| | ||||||
Sbjct: 174 atatagtaggcacttta 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
