BAC Information

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BAC

Clone NameMSMg01-088B24
Chromosome5 (Build37)
Map Location 137,380,594 - 137,380,714
singlet/doubletsinglet
Overlap genenone
Upstream geneYwhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021
Downstream geneRabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088B24.T7 (MSMg01no088_b24.b1)MSMg01-088B24.TJ (MSMg01no088_b24.g1)
ACCAG306964AG306965
length793751
length of high quality
(start - end)
79 (45 - 123)121 (76 - 196)
definitionCHROMAT_FILE: MSMg01no088_b24.b1 PHD_FILE: MSMg01no088_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:29 2005CHROMAT_FILE: MSMg01no088_b24.g1 PHD_FILE: MSMg01no088_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
TAAATGCTTACGGGGGCCTGTTCCTGCAGTTGCTGGTGGGATGGTAGTAG
AAGGGGAGCAAGCTGACTGCGGGGGGTTAGGGGAGGCACAGGTTCCTTTT
CTCCTCCGTAAGACCCAATGTCAGGACCTACGATCTACCTTTCCTTCCGT
TCCCCTTCCCTTCTTCCCCGTTTCGTCTCCCTTCCCTTTCCCCTTCCGTT
TTCTGTTCCCCTTCCCCTCTATACCCCGTGACATATACCCCTCTCATCTC
TCTTCCCCCCCCTCTATCCTTTTTTTTCCCCATCTATACCTTCCACACCC
CCCTGTATTTTTTTCCCCCCCCCCGTTCCCCCTTTTCTTTTCCCTTTTTC
CCACTTCTATTTCCCCCCCCCCCTCCCACTTATAATAATTTTCCCCCCCC
CTCTTTTCATTCTTCTCTCACCTTTTCCCTCCCCTTTTTTTCCCTTCCCT
TTCCTCTTCCCTTTTTCCTTCCCCGCCCCTTTTCCTCTTCCTTTTCCCCC
CCCCTTTTCCTTTTCCTTTTCCTTTTCCTTTCCCCCCCCCCTCTTATTAT
TTTATTACCTCCTCCAACTTCCTTCTCTCCCCGATTTCCTTATCTCCTTT
TTCTTGTCTCCCCTCCCTTTTTATTTTATCTTCCCCTCTCTCTCTCCCCC
TCTTCTTCCCTTTCCTCTCTTCCTCCTTCCCCACCCTTCTTTTACTTCCG
CCATTCTTTTGCTCCCCCTATCCCCTCTCTTCTCCTCTCCCTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACGCCCCCTTCTGGCCTCCTCAGG
CACCAGCACCCACTTGCATGTGTGTGCCTTAGTTTGCTTTTCCTCCTTTC
TTTCTTTTGGGGGATGGAGGTTAGGGGGAGGGTTCGAGAAAGGGTTTCCC
CGTGTTGCCCTGTTCATCCTGGAATTCTGTAGACCCAGCTGCCCCCTAAT
TCACAGATCTTTCTGCCTCTGCCTCTTGGATGTTGTCACTAAAGTTCCTA
TAGCTGTGACAAAACCCGGACCACTTTTTTTTGCCGTCCCTTAAAGGTAC
TATTTCCATCTATGCTTTGTTTTCCCCCTTGCTACCACCTGGTGTTTATA
TTTGAATGCCTGGACTTACCCCCCATCTCTGTTCACCATACTTTTTATTG
TCTGGACCGCTAGCCATGTTCAATTTTCCCTCCCGCACGGCTTATTTTTT
TCTGACTTGGGGCTGCATCGTCCTATTTGGCACTTGATTTTTCCTTCTAC
CCTCCCGCCGCCCCTTACTCTTTTTTTTTTATCGGCACCCGTCCCTTATT
GGGTATTGGCTCTTTTTTACTTTCTAATTTTCACCCCCCTTTTTCTTCTT
CCTTGGCGGCCGTCTCTACCTTCATGCGCTCCCTTTTCCCCCCCCCCTTA
TTCCCCTCTTTCTCCCTACACCCCCTTACCTCGCCCCTTTCCCCCTCTTA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_b24.g1 MSMg01no088_b24.g1 CHROMAT_FILE:
MSMg01no088_b24.g1 PHD_FILE: MSMg01no088_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:29 2005
         (121 letters)



>mm_chr5_137380394_137380914
          Length = 521

 Score =  211 bits (109), Expect = 1e-59
 Identities = 118/121 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgcccccttctggcctcctcaggcaccagcacccacttgcatgtgtgtgccttagttt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 321 aacgcccccttctggcctcctcaggcaccagcacccacgtgcatgtgtgtgtcttagttt 262

                                                                       
Query: 61  gcttttcctcctttctttcttttgggggatggaggttagggggagggttcgagaaagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gcttttcctcctttctttcttttgggggatggaggttagggggagggtttgagaaagggt 202

            
Query: 121 t 121
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 521
Length adjustment: 8
Effective length of query: 113
Effective length of database: 513
Effective search space:    57969
Effective search space used:    57969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)