BAC Information

Click to search

BAC

Clone NameMSMg01-088E06
Chromosome5 (Build37)
Map Location 42,322,038 - 42,322,405
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
Downstream geneLOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088E06.T7 (MSMg01no088_e06.b1)MSMg01-088E06.TJ (MSMg01no088_e06.g1)
ACCAG307069AG307070
length880686
length of high quality
(start - end)
137 (111 - 247)427 (48 - 474)
definitionCHROMAT_FILE: MSMg01no088_e06.b1 PHD_FILE: MSMg01no088_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:40 2005CHROMAT_FILE: MSMg01no088_e06.g1 PHD_FILE: MSMg01no088_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTATTTTTTATTCNGNAAACCCTCCATATAGTATTACATACGAAGCAC
CNCCTTCCACCNNNTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CAAAAGAGGATCCGCGGAATTCTTTGTTCACCTCTGAGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATAT
GTTAGGATATTAGTCCTCCTATCTGATTTAGGATAGGTAAAGATCCTCTT
CCCAATCTAGTTGGTGGTCCTTTTTCGTCTATATTGATGGCTGTCTTCTT
GCCTTTGCAGAATACTTTGGTAGTTTCATTATGGTCCCATTTTGCCAATT
CTCGATGCTTACTTGCTCCAGCCATCTGCTGTCTCTGTTACAGTGAATTC
TTTCCCTCTGTGATCCATATTTCTTCCACGTATTTTCCCCCACTTTCTTC
CTTCTATAAGCTTTTCCGCGTTCTCCTGAGTCTTTATTGCGTTAGTTCTC
TTGATTCTTTTTTAGCATTTTCACCCTTCTACTACTAGCGTGACGATAGT
TTGTTATCGGACTTCCCTTTTCCTTTCTGGTTGGTATCCCTTGACATTAC
CTCCTCACTGCGTCTATATATTTCTTGTAAAATTGCCCTCTCCTTGCTTT
CCGACCGTGCCCTCACTTGCCCTTCACCCCACTGTTTCATTCGCCCAACT
CCTTCTATGTTCTTTCTTCTCCCCTGTCCCCCTCGTTTATCTACTTTCTT
TATTGCCTCCTCTTTTTATTCTGTATCTGCACTTATTCTCCTACTGTGTT
TTATTTTTTTCTTCTTCTGGCGAGTCACTCCTTCTATTCTTATCGCCCAC
CGATAGTAACCTTTTTCGCATTCTCACTTN
GCCTGTTTCCACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
TTTGTCACACTAAAATACAAACTTTTCTATTTTTAGAAGCAAGTGAGTGA
ATATTTTGAAGTACTACAAATGGTACAGAATTATAAATGTCAAAGTTATT
GTTCATCACATTGGGGACTAGGTCAGCCTAAATGTTCATTTTATATTTAT
GTAAAAACTTCCTGTGTAAATTTTTGCAACGCCATGAATCATAGTCACTG
TATTAGGGGACTGCTGGCTGACACTCACATCAACTTGACATTCTGTGTGT
AGGCTCAGAGACTATGTGTCCTGTACTTTTTCTCCTTGCTCAATGCAAAC
CATGATAAATCAAACTTTCTTAATATACATTCTTATGCACAGCCATACAT
ATATATGTATGTATATATATGTGTGTATATATGTATATATATATATATAT
GTACGTATAGATATTAATATAGCTACAAAGTTATTTTTCTATAATAACCA
CCATTACGTCTAAAATTCCTCTTAGCTTAATTAAAAACTTATTCTCTACT
TCACTCCAATTTACATGCTAATTAACTAATTCTTTTATATGACACCCCTA
ACTAACCAACTTGAACTCCTCACCATCTGATTTTCCTTCACAAAACATTT
CTAATCTCTACTAATAAAACACTTATAATTCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_e06.g1 MSMg01no088_e06.g1 CHROMAT_FILE:
MSMg01no088_e06.g1 PHD_FILE: MSMg01no088_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:40 2005
         (427 letters)



>mm_chr5_42321838_42322659
          Length = 822

 Score =  652 bits (337), Expect = 0.0
 Identities = 362/373 (97%), Gaps = 5/373 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttgtcacactaaaatacaaacttttctatttttagaagcaagtgagtgaatatttt 60
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 201 ttctttgtcacactaaaatacaaatttttctatttttagaagcaagtgagtgaatattgt 260

                                                                       
Query: 61  gaagtactacaaatggtacagaattataaatgtcaaagttattgttcatcacattgggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gaagtactacaaatggtacagaattataaatgtcaaagttattgttcatcacactgggga 320

                                                                       
Query: 121 ctaggtcagcctaaatgttcattttatatttatgtaaaaacttcctgtgtaaatttttgc 180
           |||||||||||||||||||||||     ||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggtcagcctaaatgttcatt-----tttatgtaaaaacttcctgtgtaaatttttgc 375

                                                                       
Query: 181 aacgccatgaatcatagtcactgtattaggggactgctggctgacactcacatcaacttg 240
           ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 376 aacgccatggatcatagtcactgtattagaggattgctggctgacactcacatcaacttg 435

                                                                       
Query: 241 acattctgtgtgtaggctcagagactatgtgtcctgtactttttctccttgctcaatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acattctgtgtgtaggctcagagactatgtgtcctgtactttttctccttgctcaatgca 495

                                                                       
Query: 301 aaccatgataaatcaaactttcttaatatacattcttatgcacagccatacatatatatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaccatgataaatcaaactttcttaatatacattcttatgcacagccatacatatatatg 555

                        
Query: 361 tatgtatatatat 373
           |||||||||||||
Sbjct: 556 tatgtatatatat 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 822
Length adjustment: 9
Effective length of query: 418
Effective length of database: 813
Effective search space:   339834
Effective search space used:   339834
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)