BAC Information

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BAC

Clone NameMSMg01-088N14
Chromosome5 (Build37)
Map Location 44,378,777 - 44,523,735
singlet/doubletdoublet
Overlap geneProm1, LOC100041413
Upstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1
Downstream geneTapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088N14.T7 (MSMg01no088_n14.b1)MSMg01-088N14.TJ (MSMg01no088_n14.g1)
ACCAG307498AG307499
length720765
length of high quality
(start - end)
160 (251 - 410)237 (73 - 309)
definitionCHROMAT_FILE: MSMg01no088_n14.b1 PHD_FILE: MSMg01no088_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:28 2005CHROMAT_FILE: MSMg01no088_n14.g1 PHD_FILE: MSMg01no088_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,378,777 - 44,378,935)(44,523,619 - 44,523,735)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGTCATATCCATAGGTGGGAAAGATCCCCACCCCCATTCTGTCAGTCAT
CTTCTAATTCAGAATCACTTCTTTCTTGGGTGTGTATGGAATGTGTTCAG
AAACCCTTCGTCATTATCACATCTTGAAGTGTTTCTATCGTCATGTGGCA
GGTTCTATGTCGGAACCATTGGCCTCTTTGTAGCCATTAGGAGGTATGAG
TAGTTGATAAGGCATGCACATTTACAGTGAAGGGCTCATGAGGTGCTCCT
GACTTTGGAATGAAAATTTTAACTAAGATATATATTGCTATAAGAACCCC
CTGAAATCTCAATGAATGTTCTATTTGTATTTCCATAATGATCTTGTCTG
AACATTTCCATCGCCCAGGATGGTATCAAGAGGCATGCTTAGAGAAAGGT
GGGAACCTGCTAAAATGGTTTAAGGTATGATACAATGTCCATTCTGCTGA
TGACCCTGCGTTGTATTGTATGTTTCTACTGCCGCCCTTTTTTAGGCTAA
TTTTACTGTCTACAGATAGTCTGTATAGGCTGAGGTGAAGGGTTATCACC
TATTCACTGCATTCTTTCAGGGCTATTGTTCTCAGACCTCTTTCAGTCCC
GTTTCTGCAATTTTTTTATTTTCCCCGCTTAATCTTACCTTATATGGTCC
CTTTTCTCTTCCCTCCCCTC
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAAGCAGTTGGGAGGCGCCAGACATGAG
GGCTGGGAACTGAATGTGTCCTCTTGGCCCTGGAAGAATCAAATTATGTT
GTATACAGCTCCACATCATTCGCTACTGATGCCTAAGGACATTTTTTTCC
TCAGGGATAAGACTAGCAAGAGGCAAGGGATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATACATATACTTTTATTTCTATACATATACATTTATATATA
CATCTATACGTATGTATGCACCTTTTTACCCCCCTCTTTCTTATTTCCGC
TTACATGGGCTTTTACCCCCTCGTGCGTACGCGTGTTTTGCTCATTTTTC
TCCCTTAACATATTTCTACTTTTACTCACCTCAATCTTTATTTTTATTTC
TGTGACGCTCGATCGCCTCTTTTCATTCTTGTCTTCTTCTTCTTACCCTA
ATCCCCCCACTATTTATTATTTCTATATTCCTCTCCAATGTTATAATTGC
CTTTGCCGTCTATTTTCCTCCTTAATTTTTCACCCCCCCCTTTTTTTTTC
ATATTTCTTTCGCCTCTTTATTTCTTCGTTTTTTCCCCTTTTCCTCTCCC
CCTTTTACTCAATTTTATTTCCTTTGCTCCCCCTTTTTATTTCCACCCTT
TATTCCTCTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_n14.b1 MSMg01no088_n14.b1 CHROMAT_FILE:
MSMg01no088_n14.b1 PHD_FILE: MSMg01no088_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:28 2005
         (160 letters)



>mm_chr5_44378576_44379135
          Length = 560

 Score =  308 bits (159), Expect = 1e-88
 Identities = 159/159 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   agttgataaggcatgcacatttacagtgaagggctcatgaggtgctcctgactttggaat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agttgataaggcatgcacatttacagtgaagggctcatgaggtgctcctgactttggaat 261

                                                                       
Query: 62  gaaaattttaactaagatatatattgctataagaaccccctgaaatctcaatgaatgttc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaaaattttaactaagatatatattgctataagaaccccctgaaatctcaatgaatgttc 321

                                                  
Query: 122 tatttgtatttccataatgatcttgtctgaacatttcca 160
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tatttgtatttccataatgatcttgtctgaacatttcca 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 560
Length adjustment: 8
Effective length of query: 152
Effective length of database: 552
Effective search space:    83904
Effective search space used:    83904
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no088_n14.g1 MSMg01no088_n14.g1 CHROMAT_FILE:
MSMg01no088_n14.g1 PHD_FILE: MSMg01no088_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:28 2005
         (237 letters)



>mm_chr5_44523379_44524015
          Length = 637

 Score =  211 bits (109), Expect = 3e-59
 Identities = 115/117 (98%)
 Strand = Plus / Minus

                                                                       
Query: 55  gccctggaagaatcaaattatgttgtatacagctccacatcattcgctactgatgcctaa 114
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 357 gccctggaagaatcaaattatgttgtatacagctccacatcattcactactgatgcctaa 298

                                                                    
Query: 115 ggacatttttttcctcagggataagactagcaagaggcaagggatatatatatatat 171
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 297 ggacatttttttcctcagggataagactagcaagaggcaagggagatatatatatat 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)