CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGGAATACCAAATGGCAGAGAAGCACCTGAAAAAATGTTCA
GCATTCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTCTGGAAATCAATCTGGCAGTTCCTCAGAAA
ATTGGACATAGTACTACCAGAAGATCTAGCAATACCTCTTCTGGGCATAT
ACCCTTAAGATGCTCCACCATGTAATAATGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATGACCAAAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGATACATTTACACAATGGAGT
ACTACTCAGTCATTAAAAGAATAAATTTATGAAATTCCTAGGCAAATGGA
TGGACCTGGAGAGCATCATCCTGAGTGAGGTAACGCAATCACAAAGGAAC
TCGCACAATATGTACTCACTGATAAGTGAATATTAGCCCAGAAACTTAGA
ATACCCAAGATACAAGATACCATTTGCCAAAACATGAAACTCCAGAATAA
TGAAGACCAAAGC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATACTTTTTGCCACAGTAATATGTGA
AAATACTCAATGGGAAAAAATCAGTATGTGCCATATAGAATTCTATTGGT
AGCTATTTATAAGAGTGGAATATTGGAGACAACCTTAACATCAACCATTA
ACAATAAAATTCAAGAACATTTACTTTATTAGTAATACATATTCATTAAA
ATATTTTCAAATGTAGTCTTTACTTAATACAATAAAAAACTTTTATTAAA
ACTATGATAGTGGCAAGACTCACCCCACAACAAGATCTTCTATCTTAGAC
CTAGTAATTATTTTGTGGTGTCAGGAATAACTTGGTAAATTTTGTTTCTT
TACCTTTCTTATTATCTTCTTAAATTTCAGTGTCTGTGATTTAAAAAAAA
ATCACAGATTAGTAATATCCAAAAGTTAGGAAGAAAAGACAAAATTTAGC
CAGGACCATAAATATTACACAAATAAACAAGTAGCTGATTTGGATGATTA
ACAGGCAAATTAAAACCAAAGGTATACTGGGGATTTGCAAGTTTTAGGAT
TACTATTAGAGAGACTTAGTCACAGCAGAACCATGGACTAGGGCTAGGAA
GATGGTCCAGCGAGTAAAGCCCTTGCTGTAAAGN

Query= MSMg01no089_b09.g1 MSMg01no089_b09.g1 CHROMAT_FILE:
MSMg01no089_b09.g1 PHD_FILE: MSMg01no089_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:46 2005
         (540 letters)



>mm_chr5_68660780_68661719
          Length = 940

 Score = 1044 bits (540), Expect = 0.0
 Identities = 540/540 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactttttgccacagtaatatgtgaaaatactcaatgggaaaaaatcagtatgtgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactttttgccacagtaatatgtgaaaatactcaatgggaaaaaatcagtatgtgccat 260

                                                                       
Query: 61  atagaattctattggtagctatttataagagtggaatattggagacaaccttaacatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagaattctattggtagctatttataagagtggaatattggagacaaccttaacatcaa 320

                                                                       
Query: 121 ccattaacaataaaattcaagaacatttactttattagtaatacatattcattaaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattaacaataaaattcaagaacatttactttattagtaatacatattcattaaaatat 380

                                                                       
Query: 181 tttcaaatgtagtctttacttaatacaataaaaaacttttattaaaactatgatagtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcaaatgtagtctttacttaatacaataaaaaacttttattaaaactatgatagtggc 440

                                                                       
Query: 241 aagactcaccccacaacaagatcttctatcttagacctagtaattattttgtggtgtcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagactcaccccacaacaagatcttctatcttagacctagtaattattttgtggtgtcag 500

                                                                       
Query: 301 gaataacttggtaaattttgtttctttacctttcttattatcttcttaaatttcagtgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaataacttggtaaattttgtttctttacctttcttattatcttcttaaatttcagtgtc 560

                                                                       
Query: 361 tgtgatttaaaaaaaaatcacagattagtaatatccaaaagttaggaagaaaagacaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgatttaaaaaaaaatcacagattagtaatatccaaaagttaggaagaaaagacaaaa 620

                                                                       
Query: 421 tttagccaggaccataaatattacacaaataaacaagtagctgatttggatgattaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttagccaggaccataaatattacacaaataaacaagtagctgatttggatgattaacag 680

                                                                       
Query: 481 gcaaattaaaaccaaaggtatactggggatttgcaagttttaggattactattagagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaaattaaaaccaaaggtatactggggatttgcaagttttaggattactattagagaga 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)