BAC Information

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BAC

Clone NameMSMg01-089C01
Chromosome5 (Build37)
Map Location 6,863,912 - 6,864,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C01.T7 (MSMg01no089_c01.b1)MSMg01-089C01.TJ (MSMg01no089_c01.g1)
ACCAG307705AG307706
length694684
length of high quality
(start - end)
409 (36 - 444)425 (55 - 479)
definitionCHROMAT_FILE: MSMg01no089_c01.b1 PHD_FILE: MSMg01no089_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:50 2005CHROMAT_FILE: MSMg01no089_c01.g1 PHD_FILE: MSMg01no089_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAACT
CTAGTCCAGGAAATATTGACAACTGAAAACCACTAAGTGAAAGACATTAT
TTTTTTAAAAAAAAATATATTCTCTCATAGATAGATAATATTTTGCAGAG
GCCTACAAATCTAAGCTTACATGTGAAGTACAAATTAGACCATATAGGCT
AAAAAAAAAAAAAAAAAGGAGGATGTAATTATACTGTTTGCATAGCGGGT
GATGTATTTGGGAGGAGTTGAGGAAAAGAAATAAATATGACCAAAAACAT
TGTAAAAATATCTAAGAACTAATAAAACTATTAATTTCACTAAAAATACT
TAATGACTTATTGGCATGAGTGTGAGTGATGCATCTCAGTTCTAGAGACA
CAGTGCCTAGAATTGATGAGTAACTTTTGTTTTCAGGGCTAGTGACAGAG
ATAAAGTAGGAGAATCAGTAAATTAAAAACCATGTCCTAGAAAAAGCAAG
AAAGTAATTCTTCTACAAACCTGATAGATGACAGTCTCAAGAACAGAATG
CCAACTCTTATACCCCCAATCTCAGGATGTAACCATTACTTTTCCTTAAT
ACCCCTTAACATCAATGTCCCTACCTCCCCCCCATAAAGCACTATTCTGA
TTTTATTGGCCTCTCCACACTGGATCTTTTTTTCTGCCACTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACCTTGGTGGATTTTTCCATTAATGAGTATGACGTCTCCTTCCCCA
TCTCTTTGGATTGCTTTAAGTTGAAAATCTCTTTTATTGGTTATTATAAT
GCCAACTCCAACTTATATCTTGGGACCATTTCCTTGGAAAACTTTTTCCA
GCTCTTTACTCTAAGTTAGTGTCTGTCATTTTGCTGAGGTGTGTTTCTTC
TATGAAGCAAAATGATGGATCCTGTTTGTATATTTAGTATATAGTCTGTG
TCTATTTATTGGAGAATTGAGTCCATTGATATTGAGAGATATTAAAGACC
ACTGATTGTTAGTTCATATTATTTTTGTTGTTGGAGGTTGTCTTATGTGC
GCATAATTCTCTTATTTTGAGTTTGCTGTGAGACGATTTATTTTCCTGTT
ATTTTTTGGGTATAGGGTAACCTTGGCCTAGACTTTTGCTTTTTAACACA
CAGAGCACATTAATCCTTATCAGAGATTTGAAATAAAGCACAAGAGGCAC
AATTTGTGATACTTGCTGTATAACATTCTGTTTCGCCAAATTCCAAGGAC
GCATATCATTTTAAGACTCACACCTATTATTTCTTTTCACTATCCACTCA
CTCATTTACTTACTTAATTACTCACCCTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c01.b1 MSMg01no089_c01.b1 CHROMAT_FILE:
MSMg01no089_c01.b1 PHD_FILE: MSMg01no089_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:50 2005
         (409 letters)



>mm_chr5_6863703_6864511
          Length = 809

 Score =  694 bits (359), Expect = 0.0
 Identities = 392/407 (96%), Gaps = 8/407 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaactctagtccaggaaatattgacaactgaaaaccactaagtgaaagacatt 63
           |||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 210 ggaattccaactctagttgaggaaatattgacaactgaaaaccactaagtgaatgacatt 269

                                                                       
Query: 64  atttttttaaaaaaa-aatatattctctcatagatagataatattttgcagaggcctaca 122
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atttttttaaaaaaataatatattctctcatagatagataatattttgcagaggcctaca 329

                                                                       
Query: 123 aatctaagcttacatgtgaagtacaaattagaccatataggctaaaaaaaaaaaaaaaaa 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 330 aatctaagcttacatgtgaagtacaaattagaccatataggctaaaaaaaaaa------- 382

                                                                       
Query: 183 ggaggatgtaattatactgtttgcatagcgggtgatgtatttgggaggagttgaggaaaa 242
           |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 383 ggaggatgtaattatactgtttgcgtagagggtgatgtatttgggaggagttgaggaaaa 442

                                                                       
Query: 243 gaaataaatatgaccaaaaacattgtaaaaatatctaagaactaataaaactattaattt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaaataaatatgaccaaaaacattgtaaaaatatctaagaactaataaaactattaattt 502

                                                                       
Query: 303 cactaaaaatacttaatgacttattggcatgagtgtgagtgatgcatctcagttctagag 362
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 503 cactaaaaatacttaatgacttattggcatgggtgtgagtgatgcatctcagttctagcg 562

                                                          
Query: 363 acacagtgcctagaattgatgagtaacttttgttttcagggctagtg 409
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acacagtgcctagaattgatgagtaacttttgttttcagggctagtg 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)