Query= MSMg01no089_d08.b1 MSMg01no089_d08.b1 CHROMAT_FILE:
MSMg01no089_d08.b1 PHD_FILE: MSMg01no089_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:56 2005
(480 letters)
>mm_chr5_30255789_30256668
Length = 880
Score = 837 bits (433), Expect = 0.0
Identities = 468/487 (96%), Gaps = 13/487 (2%)
Strand = Plus / Plus
Query: 7 gaattcattttgatggc-acttatatgccacaatacatgtgtggaggtttgaaggcaccc 65
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaattcattttgaggggtacttatatgccacaatacatgtgtggaggtttgaaggcaccc 253
Query: 66 tgaagatatcattgcttttctactgccatgtagattcaatgagtcaaacacaagtccttg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgaagatatcattgcttttctactgccatgtagattcaatgagtcaaacacaagtccttg 313
Query: 126 agcttggcagcaagcgcctttgctcactgagtcaccttgctggctcttttctagcatttt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agcttggcagcaagcgcctttgctcactgagtcaccttgctggctcttttctagcatttt 373
Query: 186 aaattattctgggtctcatatttcagtctttaacccatcttgtgtttatttctatgtctg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaattattctgggtctcatatttcagtctttaacccatcttgtgtttatttctatgtctg 433
Query: 246 ctgtaagattatggtatagctt------------ttatacgttgcataagtgcacatatg 293
|||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct: 434 ctgtaagattatggtatagcttgtttcttttcttttatacggtgcataagtgcacatgtg 493
Query: 294 ctatatgttcacatgtataccatgcactgccagtaagagaacaccttcaggtgtttctta 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctatatgttcacatgtataccatgcactgccagtaagagaacaccttcaggtgtttctta 553
Query: 354 gaaacagctcatcttcaacttgtatttgaagacagggctgtcaccagcttgtagctagac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaaacagctcatcttcaacttgtatttgaagacagggctgtcaccagcttgtagctagac 613
Query: 414 tgtccaggcgtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcaga 473
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgtccgggcatggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcaga 673
Query: 474 tttctga 480
|||||||
Sbjct: 674 tttctga 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_d08.g1 MSMg01no089_d08.g1 CHROMAT_FILE:
MSMg01no089_d08.g1 PHD_FILE: MSMg01no089_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:56 2005
(286 letters)
>mm_chr5_30366185_30366870
Length = 686
Score = 532 bits (275), Expect = e-155
Identities = 281/283 (99%)
Strand = Plus / Minus
Query: 4 tctacagggagttctggtctctgctcttaaagccttcagctgattgggtgatgcccactc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tctacagggagttctggtctctgctcttaaagccttcagctgattgggtgatgcccactc 531
Query: 64 acagtttgggaagcaatctgctttaaagtgtcctgattcgaatgacttctccactaagaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acagtttgggaagcaatctgctttaaagtgtcctgattcgaatgacttctccactaagaa 471
Query: 124 caactccagataagtctcactttggactaatagtcagtgactcacagcacccgtttccct 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 470 caactccagataagtctcactttggactaatagtcagtgactcacagcacccatttccct 411
Query: 184 tttcaggtgacgggacaaaccacgcctctgccacgtcaacagcagacttttttggatcaa 243
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tttcaggtgacgagacaaaccacgcctctgccacgtcaacagcagacttttttggatcaa 351
Query: 244 gtcacttctcagaagaaagctgaggcacagcctgtccaccagg 286
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtcacttctcagaagaaagctgaggcacagcctgtccaccagg 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
