BAC Information

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BAC

Clone NameMSMg01-089E20
Chromosome5 (Build37)
Map Location 35,887,361 - 35,887,597
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz
Downstream genePlk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E20.T7 (MSMg01no089_e20.b1)MSMg01-089E20.TJ (MSMg01no089_e20.g1)
ACCAG307837AG307838
length682729
length of high quality
(start - end)
234 (32 - 265)173 (55 - 227)
definitionCHROMAT_FILE: MSMg01no089_e20.b1 PHD_FILE: MSMg01no089_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:04 2005CHROMAT_FILE: MSMg01no089_e20.g1 PHD_FILE: MSMg01no089_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCTTAGTGCTGCCTCTGAGTTGCTTCTAAAACCTGA
CTTAAAACAAGAAATAAGTTGTCCCTGCTTATCCATGTGTGTGTGTGTGT
GTGTGTGTGTGGTAGGGGCAAGACACTACTGGGTGCCTGAAGCCACAAAC
AGTCTCAATCCTGTACATGAACATGGACACAGGATATGGAAACAATGATA
AGTGACTGACTAGCAGAGCGGTCATCTGCCCAGCCTGGATACTCTGGACA
AAGCCACGGTCCAGGAGGAGCAGAGGAGAAAGGTCTGACTATCGTTTTGG
AGCAGATTGACTGTGAGCTGTTTTTTTTTTATCCCCCCCCCCCGCCCCTT
CCTCTTGTTCTTGTCTGCCTGTCTTCTAGGTCTCAATGTTATCAAGACAA
TAAGTACGGTTAATTTCGACTCTCGAACTGTATTCCACATCATCTTGTCG
TGCAGCGTCTTCTGTTCTCCTTACCTACGATCACGGCCACGTCCTCCACG
ATGTTTCATATCCCATTTTTTATGTCTTTCCTGCCCCGTACCCTATACCC
CTTCTTGCTTTCCTTCCCGTGTTCTCTCCATTTTCATATACCATTTCCTG
TACCACTCTTCTGCCCCTTGCATCTCCCCTATTTTCTTTTTTCCCCCTTT
CTCTAAACAATTCCTTCTACCCTCTCTCCCCT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTCCTGTGGAGCAGGCATCAAACCCAATCAGAAAGGGGCTGGCTG
GTCACCCCTCTAACAGTCATGCACAACTTGCCTGGCAGTGGTTACTGCCA
CAGGTAGCTCACAGGTTTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTTT
TTTGTTTGTTTGTTTGCTTTTTTGAGACAGGGTTTTGATATGTCCACCAT
ACTGTCCTTGAATTTGAATCCTTCCTATCTTATCAGATCCCATAAGACTC
ATATTTTCTCGTCTCCCCCATCTGAAAATCAAGTTTTTACGATTTTTTTT
TTTTCCCCCCCCTCCCCCCCCTATAACTGTACCTTTATCCTTCTTATTCT
CCTCTTCCTCACTACAAAAACATAATTTTCCCTCGGGCGCTGTTCCTCCC
TCCTACTTTCTTAATTCCAACATTATATTCTCCCTATCCATTTTTCTTCA
CTTTCTCGCCTTTTTCCCTATTCTTCTCTATCTTTCCCCCCCCTCATCAC
TACTCTTATATCCTCCCTATTTATTCCCCCCCCCCCCCACACCCATTTTT
CATCTACCTTTTCTTTTTTTTTTTACTCCCCTACCCATTAACCCCCCATT
TTTTCTTATCCCATATTTTTTTTTATTCCCTTCTTCTCTTTTCATTTTCC
CCCTCCCTATATTCCTTTTTAACCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e20.b1 MSMg01no089_e20.b1 CHROMAT_FILE:
MSMg01no089_e20.b1 PHD_FILE: MSMg01no089_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:04 2005
         (234 letters)



>mm_chr5_35887081_35887714
          Length = 634

 Score =  439 bits (227), Expect = e-128
 Identities = 234/237 (98%), Gaps = 3/237 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgcttctaaaacctgactt-aaaacaagaaataagttgtccctgcttatcca--tgt 57
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||
Sbjct: 517 agttgcttctaaaacctgacttaaaaacaagaaataagttgtccctgcttatccatgtgt 458

                                                                       
Query: 58  gtgtgtgtgtgtgtgtgtgtgtggtaggggcaagacactactgggtgcctgaagccacaa 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtgtgtgtgtgtgtgtgtgtgtggtaggggcaagacactactgggtgcctgaagccacaa 398

                                                                       
Query: 118 acagtctcaatcctgtacatgaacatggacacaggatatggaaacaatgataagtgactg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acagtctcaatcctgtacatgaacatggacacaggatatggaaacaatgataagtgactg 338

                                                                    
Query: 178 actagcagagcggtcatctgcccagcctggatactctggacaaagccacggtccagg 234
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actagcagagcggtcatctgcccagcctggatactctggacaaagccacggtccagg 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)