BAC Information

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BAC

Clone NameMSMg01-089L14
Chromosome5 (Build37)
Map Location 72,308,983 - 72,309,252
singlet/doubletsinglet
Overlap geneGabrb1
Upstream geneGabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089L14.T7 (MSMg01no089_l14.b1)MSMg01-089L14.TJ (MSMg01no089_l14.g1)
ACCAG308147AG308148
length790687
length of high quality
(start - end)
275 (104 - 378)571 (75 - 645)
definitionCHROMAT_FILE: MSMg01no089_l14.b1 PHD_FILE: MSMg01no089_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:38 2005CHROMAT_FILE: MSMg01no089_l14.g1 PHD_FILE: MSMg01no089_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTGTTTTTTCTTCTTTTTTTCTTTTTTCCTCTCCA
AAACAANCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCCGCGGAATTCCATAGACTGTCAAAGGTCCTTTTCTGATGGAGAAA
AACTACCCACATGCAACTTCTAAAGATTTGATCTCTAATCATCTCAGTCA
TTTCCTGCTTGTCACCATGTCCCCTTTCTATGTTTCTGATTTTGACCTTC
AAATGCAGTGAATGAGAAGTCACAGTGTACAGTCTGTATGTGGCACAGAT
TGCGTTGTGAGCCCAGAACTCATCCACCCCATCTCAGGCCTTATGAGTTA
GCACACCATCTATAGAAGCAATTCCAGACTATGTTTCCCCTTCATTAAGA
CCACTGAGGCTTAATAATTTTTTTCTTTCCCCTCCCTCTCCTTCCATCTC
AAGGTCAATCCTAATGTTCTTTTTCCACCCCTTGATACAAATCCCTGTCT
CCATACCTTGATCTATTCCTATTCGCCCAGACACTACTGATACGGCCTTC
CACTCCCCCTGTTTTGCCCTAATCTTCCTCTCCTACATTTCCTCCCATTT
ATCTCCGCAATCCAATCCCCATAATCCTAATCTTCTCTCCACCTCATTAT
TATCTCCTATCCTCTTCCTTACCCACCCATACTTAACCCCTTATTATCAC
TTATTTCTAACCTACCCCCTTTCCCCCTCTCTTCCCTTCCCTTCCCTTCT
ATACCCATTTTCATTTTCCCAATTTCCTTCCTTTCACTCC
ACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTAAGCCACTTTT
CAATTGGGTTATTTGGGTTGTTGGTGTCTAGCTTCTTGAGTCCTTATATA
TTTTGTATATTAGTCCTCTGTCAAATGGAGGGTTGGTGAAGATCTTTTCC
CATTTTGTAGTCTATCTTTCTGTCCTATCATGGTGTCTTAACCTTACAAA
AGTTTTCATTTCATGAGGTCCCACTTATTAATTGTTGATCTTAGTGTCTG
AGCTATATATGTTCTGTTCAAGATCTCGGATCTTCTATGAATGTGTTCAA
GGCTATTCCTCACTTTTCTTCTATTGGTTTAGTATATTTGATTTTATGTT
GAGGTCTTTGATACACTTTGATTAGTGTTTTGTGCAGGGTGAACAATATG
AGTTTATTTTTTCCCACATTTTTTGTTAGCTATTTTCTTCATTTACATTT
CAAATGCTATTCCAAAAGTCCCCTCCCCCCGCCCTGCTCCCCTACCCACT
CACTCCCACTTCTTGGCCCTGTCATTCCCCTGTACTGGGGCATATAAAGT
TTGCTAGACCAAGTTGCCTCTCTTCCCAATGATGGCCAACTAGGTATTTC
TTCTGCTACATATGCAGCTAGAGACACGAGCTCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_l14.b1 MSMg01no089_l14.b1 CHROMAT_FILE:
MSMg01no089_l14.b1 PHD_FILE: MSMg01no089_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:38 2005
         (275 letters)



>mm_chr5_72308777_72309452
          Length = 676

 Score =  499 bits (258), Expect = e-146
 Identities = 267/270 (98%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccatagactgtcaaaggtccttttctgatggaga-aaaactacccacatgcaact 65
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 476 gaattccatagactgtcaaaggtccttttctgatggagataaaactacccacatgcaact 417

                                                                       
Query: 66  tctaaagatttgatctctaatcatctcagtcatttcctgcttgtcaccatgtcccctttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tctaaagatttgatctctaatcatctcagtcatttcctgcttgtcaccatgtcccctttc 357

                                                                       
Query: 126 tatgtttctgattttgaccttcaaatgcagtgaatgagaagtcacagtgtacagtctgta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tatgtttctgattttgaccttcaaatgcagtgaatgagaagtcacagtgtacagtctgta 297

                                                                       
Query: 186 tgtggcacagattgcgttgtgagcccagaactcatccaccccatctcaggccttatgagt 245
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 296 tgtggcacagattgcggtgtgagcccagaactcatccaccccatctcaggacttatgagt 237

                                         
Query: 246 tagcacaccatctatagaagcaattccaga 275
           ||||||||||||||||||||||||||||||
Sbjct: 236 tagcacaccatctatagaagcaattccaga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 676
Length adjustment: 9
Effective length of query: 266
Effective length of database: 667
Effective search space:   177422
Effective search space used:   177422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)