CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCTTAAAATATTTTGGTTGAGTAACACTGATTGTATTGTTTTT
AAAAACTAGGTATTTAAAAACCAAGTTTTTCTATAAATGTAGATAATTTC
TTTATAACATTTTAGCCACTTCTGTATTCTATTATTTTGTTGTAATTATC
AAATGTCTCCCCAATTCACCTTTAAATATTTGTCTGCTAAATATGATAGT
ATTATGTTTAATTATTTTAACTTAGTTACAAAGTTATTTCCTACTTTGGC
ATATTTTTAAAATATTGTTGTAATATTTTTATACAATTTTTAATCATAGT
ATGACAATAAAGTCATTTAAGTAGACTTTCAAGAAAAATCACTGTGCACA
TTTTTATTCCTATTACTCTGCATTATTTTTTGTGATTGAAGTTCACAGAA
TAGATTCTTAATAAAAAAATTATCTTCTATTTCTTTACTTATTAATTAAT
TTACCAAAAAAATGAATATTAAAGTGTGTTCTTGACCTATTTATTTTGTA
AAATAATATATTGCTGGTTCTATTTGTCACATAATAGGGACATGCGTTTT
GTTTGGAATCACAGCTGAGTCATACATCATAGCTTTAATAAGAGTTCAAT
TGCTACACTAGCTTCTGCCCAAATATGTTTAATTTTTCAACTTGATTCTT
AGATTATGATCTTTGATACCATTAN

CGAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGCTCCTTCTATGATACTCTTTGTTTGG
TGTTTAGTTCCTGGGTGCTCTGCGTGGTTCAATTAGTTGAGATTGTTCTT
CTTATGGCTTGCAATTCCCTTCAGCTCCTTCAGTCCTTCCCTAGCTCTTT
CACTGGGGTCCCTGGGCTGAATCTGATGGTTAGATGTAATTAACTGTACT
TTTTTTGTCAAATGCTAGTAGAACCTCTCAGGGAACAGCCATATCAGACT
CCTGTCAGCAAGCACTTCTTGGCATCAGCAATAGTGTGGGGGGGTTGGTG
CCTGCTAAGGGGGTGGATCCCTAGTTGGGGTGGTCTCTGCATGGCCTTTA
CTTAAGCCTCTCGCCCAGTTTTTGTCCCTGTCATTCCTTTGGACAGGAAC
TTTTCTCAGCTGAAAATTTTGAGGTGTGCGAGTGGCCTCTTCCCTCACCT
GGGGGATATGCCTATCCACCTGGGGCAGCCCCTACAGTGTGTATCTCCAT
TTTTTCTAATGTCCTTCGCATTTGTTTCCTGCCACGTCTCCTGTTTCTTT
TGCACTCTTTGTACTTTTTCAGCGTTTACTGTTTTTTCCTCTTTTCCCTC
CTGTTAACTGCTTCTTTCCTCTTCCACGATCCTCTGGATTTTCCTTAGCC
GTCTCCTCAG

Query= MSMg01no089_m15.b1 MSMg01no089_m15.b1 CHROMAT_FILE:
MSMg01no089_m15.b1 PHD_FILE: MSMg01no089_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:43 2005
         (541 letters)



>mm_chr5_60251378_60252318
          Length = 941

 Score =  891 bits (461), Expect = 0.0
 Identities = 518/537 (96%), Gaps = 2/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaccttaaaatattttggttgagtaacactgattgtattgtttttaaaaacta 63
           ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattctaccttaaaaaattttggttgagtaacactgattatattgtttttaaaaacta 263

                                                                       
Query: 64  ggtatttaaaaaccaagtttttctataaatgtagataatttctttataacattttagcca 123
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtatttaacaaccaagattttctataaatgtagataatttctttataacattttagcca 323

                                                                       
Query: 124 cttctgtattctattattttgttgtaattatcaaatgtctccccaattcacctttaaata 183
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttctgcatcctattattttgttgtaattatcaaatgtctccccaattcacctttaaata 383

                                                                       
Query: 184 tttgtctgctaaatatgatagtattatgtttaattattttaacttagttacaaagttatt 243
           |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgtcggctaaatatgatagtgttatgtttaattattttaacttagttacaaagttatt 443

                                                                       
Query: 244 tcctactttggcatatttttaaaatattgttgtaatatttttatacaatttttaatcata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctactttggcatatttttaaaatattgttgtaatatttttatacaatttttaatcata 503

                                                                       
Query: 304 gtatgacaataaagtcatttaagtagactttcaagaaaaatcactgtgcacatttttatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtatgacaataaagtcatttaagtagactttcaagaaaaatcactgtgcacatttttatt 563

                                                                       
Query: 364 cctattactctgcattattttttgtgattgaagttcacagaatagattcttaataaaaaa 423
           ||||||| |||| |||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 cctattattctgtattattatttgtgattgaagttcacagagtagattcttaataaaaaa 623

                                                                       
Query: 424 attatcttctatttctttacttattaattaatttaccaaaaaa-atgaatattaaagtgt 482
            ||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 -ttaccttccatttctttacttattaattaatttaccaaaaaatatgaatattaaagtgt 682

                                                                    
Query: 483 gttcttgacctatttattttgtaaaataatatattgctggttctatttgtcacataa 539
           ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 683 gttcttgacctatttgttttgtaaaataatatattgctggttctattagtcacataa 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)