BAC Information

Click to search

BAC

Clone NameMSMg01-089N03
Chromosome5 (Build37)
Map Location 79,857,447 - 79,857,754
singlet/doubletsinglet
Overlap genenone
Upstream geneMthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089N03.T7 (MSMg01no089_n03.b1)MSMg01-089N03.TJ (MSMg01no089_n03.g1)
ACCAG308219AG308220
length703684
length of high quality
(start - end)
312 (44 - 355)331 (56 - 386)
definitionCHROMAT_FILE: MSMg01no089_n03.b1 PHD_FILE: MSMg01no089_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:46 2005CHROMAT_FILE: MSMg01no089_n03.g1 PHD_FILE: MSMg01no089_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGAAATGTCTAATCTAATTCATTTCTAAACCCTGGTATTTACCACA
TGTTAGCAGCAGCTTACATTTCTCAAACTTCCTAGGCTCATGCAAATGAA
CAGAAACCATACAGGTAAACACTGAGAATAACAAAATGTTAGAAATCAAA
TAGCTAAATGCAGAACAAATCTTTTGGATAGATAGATACCAGTGGGGCTT
CCTATGTTATTTTTCTACAATATAGATTTTCTTGAGGGTACATGTTTAGA
AAAACGTGTGTTAAAACGTGAGTAACACATTGTTTACACAAAAGGCTTCC
CAAAATGTGTTCATATGCCCCTGCACAGGTCCTTTATTCCTTAGGGAATA
TCTGATTCTCCCATTTGGGCATATTTCCTCCTCTGCATTAAGGCTCCTCT
TAACTGCATCGCTACAATAATTGGAATGAGTATGAACAAACAATGGCCCT
TAAAGCCCTCTTTAGAGAGTAACATGTGTTTCAGAGAACATCAGAAAGAA
GAGAGAAGCACAGGCATGTGTTTGTCGTCCAGGAGGCTGCCTTCAGCCCA
CAGCCCTTGATAGTAAAACAGAACCAAAAATGTCCCGTGCCAAGAAATCT
CACAAATAAGAAACTACCTCTACTTTATTGAATTAATTTTTAGCCTAAAG
GCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTGTAAGTTCACGTGTAGTAAGTTATTAAATAGGCATGGAGGAG
GTGTCCATGTAGGAAGCCTTATATAATGATAGGCATATATTTTTATGTCT
GAGTGATCACACTATTTTGAATAAATGCAGTGTGCAATTCTGACTACCAG
CAGAAATTTTCCTCTTCTTGACGGTTACCACATTTTGCTGTTTTGCATAT
TGATATAAGGGCTTCTTGGCAAACAAGTGATTGGTTGTTGTTGTTCCTTT
TGAAAGTAGTTTGCAGTGTTTTGTTTTTGTCTGCAGGTTATGAATATTTT
TCCTGCATATATGTATGTTGCTGTTGCTAATACATTCGTTGTTCACACTT
ACTTAATAATTCACCAGTGGCAACAAATTCTTGAATGTCAATATCATCTC
CAACACTGTCTAGGCTATTGCTTAGAATTGAACCTTTGGTATTTGAAGGG
ATACACTGTGCACTCCTAGGATCCCTACAATTTTACCTTCCCGTGCTTTG
AAATCGCCTCTTGAAACTATTTGTTGAGATAAATTTGTTCTTACCTTTTC
CCCTAAAAAACAATTACGGCACCGTACTAAAACATCTAACGCAATTCGGC
TTGGTAAGTAATTTTCCAATCCTCTTAGCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_n03.b1 MSMg01no089_n03.b1 CHROMAT_FILE:
MSMg01no089_n03.b1 PHD_FILE: MSMg01no089_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:46 2005
         (312 letters)



>mm_chr5_79857243_79857954
          Length = 712

 Score =  443 bits (229), Expect = e-129
 Identities = 289/309 (93%), Gaps = 2/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgaaatgtctaatctaattcatttctaaaccctggtatttaccacatgttagc 64
           ||||||||||||| |||||| ||||| |||| ||||||||| ||||||||||| ||||||
Sbjct: 205 gaattcttgaaatatctaatataatttatttttaaaccctgatatttaccacaagttagc 264

                                                                       
Query: 65  agcagcttacatttctcaaacttcctaggctcatgcaaatgaacagaaaccatacaggta 124
           |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 265 agcaacttacatttctcaaacttcctaggcttatgcaaatgaacagaaaccatacaggta 324

                                                                       
Query: 125 aacactgagaataacaaaatgttagaaatcaaatagctaaatgcagaacaaatcttttgg 184
           ||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 325 aacactgagaataacaacatgttagaaatcaaatagctaaatgcaaaacatatcttttgg 384

                                                                       
Query: 185 atagatagataccagtggggcttcctatgttatttttctacaatatagattttcttgagg 244
           | ||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||| 
Sbjct: 385 aaagacagataccagtggggctttctatattatttttctacaatatagattttcttgaga 444

                                                                       
Query: 245 gtacatgtttagaaaaacg-tgtgttaaaacgtgagtaacacattgtttacacaaaaggc 303
           ||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||
Sbjct: 445 gtacatgtttagaaaaa-gctgtgttaaaacgtgagtaacacattgtttatacataaggc 503

                    
Query: 304 ttcccaaaa 312
           |||||||||
Sbjct: 504 ttcccaaaa 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)