BAC Information

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BAC

Clone NameMSMg01-090B04
Chromosome5 (Build37)
Map Location 122,065,030 - 122,065,318
singlet/doubletsinglet
Overlap gene9330129D05Rik
Upstream geneDdx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2
Downstream geneAcad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090B04.T7 (MSMg01no090_b04.b1)MSMg01-090B04.TJ (MSMg01no090_b04.g1)
ACCAG308402AG308403
length698697
length of high quality
(start - end)
321 (38 - 358)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no090_b04.b1 PHD_FILE: MSMg01no090_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:06 2005CHROMAT_FILE: MSMg01no090_b04.g1 PHD_FILE: MSMg01no090_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCGGAATTCA
CTCTGAGTACAAGCTACGCCTGTCACTCTGCCTCTTGCTCATTATCATGT
CAAGTATCATTTTTCTTGTTGTTTGTTTGTTTTGTTTCTTTGAGACAGGG
TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAGTTTGTAGCCTAGGCT
GGCCTCACAGAGATCTACTTGCCTCTGCCTCTCAAGTGTTGGGATTAAAG
GTGCCCCCACCACCACCACACACACAGTGAATTTCCTTTTATTAGCTCAT
ACTTTCACCCTTTTTTTTTCCTTTGGTTTTTCTGAGACAGGGTTTTTCTA
TGTAGCCCTGGCTGTCCTGCACCTCACTCTGTAGACCAGACTGGCCTCGA
ACTCAAAATCGCCTGCCTCTGCCTCCCAAGTGCTGTGATTAAAGGCGTGT
GCCACCATTCCCGGCCACCCTTTTAAAATAGTGGTTGGGTCATAGTTTTA
TTGTTCCGGCTTGAGGTTGCCAGAGTATAAATTTCATGTATTCCGACCTA
TGTTAATAGTAAATTTAGCATTATCATCCCCATCATCCTGTCATTAATGG
GAATACTTGGCTTTTTAAATGATCCCTTTGGTTGTTTCCTTGGCTTGTTT
GGCTTTTGGGTTTCTCTCAACCTTTCCCTTTCCGCTCATTCCTTGCAC
NACGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGCCTCTTGGTGTTCTAGTGATGGG
GTCCAGAAACAGTTTACCTCTCAGGGCTCTGGACCCAGTCAGTGGATCGA
TCCCACAACAGATTTGTATTGAGATATCTTTGTTGGGAGCTGTTGCATCC
TGAGAGGTTTGGACCAGTTAGAGGAAGCAAGTCACTGGTGTGTGCCCTGG
AGTCCTGCCCTGGCCATTTCCTATGTTCCCTCTCTGCTTCCTGCTTGGCC
CTGAAGTACAAACCTCGTTTCTGTCATGATGCTCTGGCCAAGTGCATGGA
GCTGCGTGCACAGACTTTAAATAAGCTCTCTGAAACTGTGCCCCAGAACA
AATCCTTCCCTTGTGCTACTCTGTCAGGGAGTGGGTCACAGCAATGAATA
AGGTTACTAACACACAGGTTCTTTAAGTTTTCCAGGTCAGCTAGTATCTC
CTGCAGTTGAACTATCACACACTGTTTTCAATGAAGGTTTTAAATGGTGA
TAAGACAGGCTGGTGGGGGCTGGACTTTTATCCTAGCACTTGGAAGGCAG
AGGCAGGTTGACCTCTGAATTTGATACCACCCTGGTCTAAGGGGTGAGTT
CCTAGAACGCCAAGGGTTACTTGGTATAACCCCTGCGTCTAAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_b04.g1 MSMg01no090_b04.g1 CHROMAT_FILE:
MSMg01no090_b04.g1 PHD_FILE: MSMg01no090_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:07 2005
         (293 letters)



>mm_chr5_122064990_122065682
          Length = 693

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcctcttggtgttctagtgatggggtccagaaacagtttacctctcagggctctggac 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 329 aggcctcttggtgttctagtgatggggtccagaaacaatttacctctcagggctctggac 270

                                                                       
Query: 61  ccagtcagtggatcgatcccacaacagatttgtattgagatatctttgttgggagctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccagtcagtggatcgatcccacaacagatttgtattgagatatctttgttgggagctgtt 210

                                                                       
Query: 121 gcatcctgagaggtttggaccagttagaggaagcaagtcactggtgtgtgccctggagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gcatcctgagaggtttggaccagttagaggaagcaagtcactggtgtgtgccctggagtc 150

                                                                       
Query: 181 ctgccctggccatttcctatgttccctctctgcttcctgcttggccctgaagtacaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ctgccctggccatttcctatgttccctctctgcttcctgcttggccctgaagtacaaacc 90

                                                            
Query: 241 tcgtttctgtcatgatgctctggccaagtgcatggagctgcgtgcacag 289
           | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ttgtttctgtcatgatgctctggccaagtgcatggagctgcgtgcacag 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)