Query= MSMg01no090_n18.b1 MSMg01no090_n18.b1 CHROMAT_FILE:
MSMg01no090_n18.b1 PHD_FILE: MSMg01no090_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:09 2005
(543 letters)
>mm_chr5_64829552_64830501
Length = 950
Score = 942 bits (487), Expect = 0.0
Identities = 530/547 (96%), Gaps = 9/547 (1%)
Strand = Plus / Minus
Query: 5 gaattctgtgtccttctttctcaggcctgagtcattaaccccaaggtcgccaggcaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaattctgtgtccttctttctcaggcctgagtcattaaccccaaggtcgccaggcaaaca 691
Query: 65 ggtgcactctgtgaaccaatcacccagcacaga---ttttttttttcttctatcaaaatc 121
|||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 690 ggtgcactctttgaatgaatcacccagcacagatttttttttttttcttctatcaaaatc 631
Query: 122 cccaacaagcttggtgcttcct-atgcccagttcccctctgtcttacccatggatgctta 180
|||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 630 cccagcaagcttggcgctt-ctcgtgcccagttcccctctgtcttacccatggatgctta 572
Query: 181 cagcttgcccttcctgttttctgcctcctgaaagatgtgtgtgctttgaatcacactgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cagcttgcccttcctgttttctgcctcctgaaagatgtgtgtgctttgaatcacactgcc 512
Query: 241 ccacgctgccagctctcatctgtcagatcctgtccttaagtccaggggcattttccactg 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 511 ccacgctgccagctctcatctgttagatcctgtccttaagtccaggggcattttccactg 452
Query: 301 acaagtctttcattagtttctctctccaaggggttgtaacaccttgtcatctgatcatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 acaagtctttcattagtttctctctccaaggggttgtaacaccttgtcatctgatcatcc 392
Query: 361 tggccaatctcccgcaagacgatcgtatcatacagatcattaataaggatgaagtgtgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tggccaatctcccgcaagacgatcgtatcatacagatcattaataaggatgaagtgtgtg 332
Query: 421 caccctgagtga--ga--tcccagccccgcccggcactccaccctgcgtcagtttcagcc 476
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caccctgagtgagtgagctcccagccccgcccggcactccaccctgcgtcagtttcagcc 272
Query: 477 ctacgcatcctggcacttctgtgctttctaatttcagttcacgtgaccaatagtgacttc 536
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctacgcatcctgacacttctgtgctttctaatttcagttcacgtgaccaatagtgacttc 212
Query: 537 acgagct 543
|||||||
Sbjct: 211 acgagct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 950
Length adjustment: 10
Effective length of query: 533
Effective length of database: 940
Effective search space: 501020
Effective search space used: 501020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_n18.g1 MSMg01no090_n18.g1 CHROMAT_FILE:
MSMg01no090_n18.g1 PHD_FILE: MSMg01no090_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:09 2005
(500 letters)
>mm_chr5_64681114_64682013
Length = 900
Score = 951 bits (492), Expect = 0.0
Identities = 498/500 (99%)
Strand = Plus / Plus
Query: 1 agacagcaagttcgaccacttctgcttgctagcaaggctcgaggagtagacctgaggctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agacagcaagttcgaccacttctgcttgctagcaaggctcgaggagtagagctgaggctt 260
Query: 61 ctatactgcagtgtgggagctgggggtcctgggagtcaggtgaccaggacttgattgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatactgcagtgtgggagctgggggtcctgggagtcaggtgaccaggacttgattgcag 320
Query: 121 catccagctgccagggacttcctccttagggtcaagtgactgctcagagcatgcccccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catccagctgccagggacttcctccttagggtcaagtgactgctcagagcatgcccccag 380
Query: 181 gacaaagtccaaagtggacattttgatttgtcattctcattttaaattttgtggcgagga 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaaagtccaaagtggacgttttgatttgtcattctcattttaaattttgtggcgagga 440
Query: 241 cagggtctcacatagttcatactggtcttgaactttgtgtagctaaggctgtccttgaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagggtctcacatagttcatactggtcttgaactttgtgtagctaaggctgtccttgaac 500
Query: 301 tcccaatcctgtgagtactggaattacagatgtgattttcttctctagcttaatttgtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccaatcctgtgagtactggaattacagatgtgattttcttctctagcttaatttgtta 560
Query: 361 ccattcaaggtttcaataagctgttgagtttaaataagacaatggcaagaagtttacagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccattcaaggtttcaataagctgttgagtttaaataagacaatggcaagaagtttacagt 620
Query: 421 gttttcaggggaatcaaatctgtggacttagtgcagtctggtctgagtatgaccagcaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttcaggggaatcaaatctgtggacttagtgcagtctggtctgagtatgaccagcaca 680
Query: 481 gaggctccatgtcctgtagg 500
||||||||||||||||||||
Sbjct: 681 gaggctccatgtcctgtagg 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
