Query= MSMg01no090_o13.b1 MSMg01no090_o13.b1 CHROMAT_FILE:
MSMg01no090_o13.b1 PHD_FILE: MSMg01no090_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:13 2005
(287 letters)
>mm_chr5_70678897_70679582
Length = 686
Score = 484 bits (250), Expect = e-141
Identities = 277/286 (96%), Gaps = 1/286 (0%)
Strand = Plus / Minus
Query: 1 gtttttctttgtttgctatgaattatagatatatgatagatagattcatagatgacatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gtttttctttgtttgctatgaattatagatatatgatagatagattcatagatgacatag 514
Query: 61 agatagatgatatattgattgatggagctatatatctcagcacagcatagctttccatta 120
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 513 agatagatgatatattgattgatggagttatatatctcagcacagcatggctttccatta 454
Query: 121 atcagtcttgttatattaataaaaagagtctgttttttatattttttcaaaattagccat 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 453 atcagtcttgttatattaataaaaagagtctgttttttatattttt-caaaattagccat 395
Query: 181 atggattaagctaccaggaacaagctatcacttaataataaaacccactaccaaataata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atggattaagctaccaggaacaagctatcacttaataataaaacccactaccaaataata 335
Query: 241 attaaaaatacttatttagcttcatgtctgtgtgtgtgtggtaatg 286
||||||||||| | ||||||||||||| ||| ||||||||||||
Sbjct: 334 attaaaaatacagacatagcttcatgtctttgtatgtgtggtaatg 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space: 188206
Effective search space used: 188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no090_o13.g1 MSMg01no090_o13.g1 CHROMAT_FILE:
MSMg01no090_o13.g1 PHD_FILE: MSMg01no090_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:13 2005
(282 letters)
>mm_chr5_70523116_70523798
Length = 683
Score = 509 bits (263), Expect = e-148
Identities = 278/283 (98%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 1 atagatgtgattgtgtttactcatcttgggaaaagaaatatatcctggataacctagctt 60
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 atagatgtggttgtgtttactcattttgggaaaagaaatatatcctggataacctagctt 260
Query: 61 tacccaatttagtcatataagctatgatgaatgcagataccctttctgtgccagaaacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacccaatttagtcatataagctatgatgaatgcagataccctttctgtgccagaaacac 320
Query: 121 ataaaagtaggagatagaataaaggtacgatggataaaggtagtttaa-cttcaagatgc 179
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 321 ataaaagtaggagatagaataaaggtacgatggataaaggtaggttaaacttcaagatgc 380
Query: 180 tggaaggagctttgtgccaagcattggaagttgcaaaatctggaaaaggagagtgacgtc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tggaaggagctttgtgccaagcattggaagttgcaaaatctggaaaaggagagtgatgtc 440
Query: 240 ccatctccagctgtcagggaacaatgcagcccattgagtatgt 282
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatctccagctgtcagggaacaatgcagcccattgagtatgt 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space: 184002
Effective search space used: 184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
