BAC Information

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BAC

Clone NameMSMg01-091A16
Chromosome5 (Build37)
Map Location 31,976,053 - 32,064,388
singlet/doubletdoublet
Overlap geneRbks, Bre
Upstream geneCenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091A16.T7 (MSMg01no091_a16.b1)MSMg01-091A16.TJ (MSMg01no091_a16.g1)
ACCAG309102AG309103
length708707
length of high quality
(start - end)
272 (41 - 312)234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no091_a16.b1 PHD_FILE: MSMg01no091_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:24 2005CHROMAT_FILE: MSMg01no091_a16.g1 PHD_FILE: MSMg01no091_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,064,121 - 32,064,388)(31,976,053 - 31,976,286)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTAACCACCACTGATAAACTGAGTAGTAGTATATGGTATACTCAACACTG
ACAAGGTCTTCTCTCCTCTCCTGTCAGTTCCTCCTCTACTGAACGCTGAG
GAGAGACTTTCCTGTTGTGGTGCCTGGCCCTGCGCTCTTTTGACAGGGCT
CAAGTACTCTATGAGCAGTATCCGTCCTGTCTGCCTGAAGCGTGAGTTCC
AGGTTCACAGTGTGGTGAAGCAGAAGAAAAACAAAGCCAGAGAGACACAC
ATGCCATCACTATAGAAGTCAAACAGCCACAGTGAATTTGATGGCTGGGT
GGAAAAAAAAAACCATTCAAAGCCCTGGTGGGAGGGCTTCCTATCCCAGA
GCCTAATATTTCGCGTATGTATGCTTGTGGCGTGTTGCATATGCTTATCT
GCATCACACATGTACATCTTATATAACATCGCATTTATAATGTGTTATAA
CTAATATATACTTTGATACCTAGATATATTGATATGGCTTATCATTTAAT
AACGTTGCTCCCGAACATGCTGATTTGCCCTATTACAACTCTTATTGCAT
TGCTAACTGTCCTGTCTATTCTTACTGTGAATATTCTAAGGCATCATCTC
CCCTTACACTCTTATCTTATTCACCCTTATTCGCCCTATGTCATACCTCT
GCCTGCCA
NTCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCTCTCCAGTTGCTGTAGC
TGCACTACAAATGACTTCTGGCGCCTGTACTGCATTGGGGCTATTCACAG
GATAGTCCCCTGGCCCACAGCAGAGCTTTACTTACACTGGAACTCAGCAG
GCAGGCTGAAGGAAAGGGTATGGGATTCTCTGTCAGTTTCAGAAGAAGCA
GGAGGTTTATCATGATTCTAGTGAGTATCAAGTGTGGGACTTGAAGAGGA
GAGGGAAGCAGGGATTTCTGGTACTAAAAGAACCCTTTTTGTTTCCTTGA
GGGTGGGGCAGGAGCAGACTCTGCCCTGAATACTGTGTCATTTATGCATG
ATGTCCAAAGGAACATCTATTTAAAATGATGGAGCGCTAAGTACTACGTT
TGGGCTTAAGTTTCATTACGGAGCATCACAATCATATAAAAGTAGACCTC
CCTGTCCTGTCCACTCAGCACTTACACTCTGTTATCAACTCTCAGCTCAT
CCTGCCCCCATTTCCATTGCTGTCATGAGAGGCTAAGCCTGATTTCCCCA
TAATGCTATGGTCAACGGTGACAGCTATTATTCTCTGGGAAGCCCTACAT
GCATATTGTTCTAGGTAACAGTTTTCATGATTTTTACAGACCGTATTTGA
CGACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_a16.b1 MSMg01no091_a16.b1 CHROMAT_FILE:
MSMg01no091_a16.b1 PHD_FILE: MSMg01no091_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:24 2005
         (272 letters)



>mm_chr5_32063917_32064588
          Length = 672

 Score =  441 bits (228), Expect = e-128
 Identities = 258/268 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaccaccactgataaactgagtagtagtatatggtatactcaacactgacaa 64
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaatccctaaccaacactgataaactgagtagtagtatatggtatactcaacactgacaa 413

                                                                       
Query: 65  ggtcttctctcctctcctgtcagttcctcctctactgaacgctgaggagagactttcctg 124
           ||||||||||  ||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 412 ggtcttctcttgtctcctgtcagtttctcctctactgaacactgaggagagactttcctg 353

                                                                       
Query: 125 ttgtggtgcctggccctgcgctcttttgacagggctcaagtactctatgagcagtatccg 184
           |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 352 ttgtagtgcctggccctgcgctcttttgacagggctcaagtgctctatgagcagtatctg 293

                                                                       
Query: 185 tcctgtctgcctgaagcgtgagttccaggttcacagtgtggtgaagcagaagaaaaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 292 tcctgtctgcctgaagcgtgagttccaggttcacagtgtggtgaagcaggagaaaaacaa 233

                                       
Query: 245 agccagagagacacacatgccatcacta 272
           ||||||||||||||||||||||||||||
Sbjct: 232 agccagagagacacacatgccatcacta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no091_a16.g1 MSMg01no091_a16.g1 CHROMAT_FILE:
MSMg01no091_a16.g1 PHD_FILE: MSMg01no091_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:24 2005
         (234 letters)



>mm_chr5_31975853_31976486
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgcattggggctattcacaggatagtcccctggcccacagcagagctttacttacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactgcattggggctattcacaggatagtcccctggcccacagcagagctttacttacac 260

                                                                       
Query: 61  tggaactcagcaggcaggctgaaggaaagggtatgggattctctgtcagtttcagaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaactcagcaggcaggctgaaggaaagggtatgggattctctgtcagtttcagaagaa 320

                                                                       
Query: 121 gcaggaggtttatcatgattctagtgagtatcaagtgtgggacttgaagaggagagggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggaggtttatcatgattctagtgagtatcaagtgtgggacttgaagaggagagggaa 380

                                                                 
Query: 181 gcagggatttctggtactaaaagaaccctttttgtttccttgagggtggggcag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggatttctggtactaaaagaaccctttttgtttccttgagggtggggcag 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)