BAC Information

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BAC

Clone NameMSMg01-091D23
Chromosome5 (Build37)
Map Location 41,094,616 - 41,267,708
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091D23.T7 (MSMg01no091_d23.b1)MSMg01-091D23.TJ (MSMg01no091_d23.g1)
ACCAG309250AG309251
length707709
length of high quality
(start - end)
378 (66 - 443)406 (76 - 481)
definitionCHROMAT_FILE: MSMg01no091_d23.b1 PHD_FILE: MSMg01no091_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:41 2005CHROMAT_FILE: MSMg01no091_d23.g1 PHD_FILE: MSMg01no091_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,094,616 - 41,094,993)(41,267,303 - 41,267,708)
sequence
CATAATTTGCGGCGCTATACGACTCCTATATTCAGXXXXXXXXXXXXXXX
XXXXGAATGATCCGTGAACTTGACCTTTGACACCAGCATACAATTGCATA
CATGTTCACAAGCACCAACATATATGTGTACATATACACATACGTACATG
AAAAACTCCAAATATAAACACAGACATATGAAGAGAAACAAAACTGGAGA
CATGAATACAGATTATAAAATCGTACATAGTTTGCAAAAATGACTGTGTG
CCCTAATGTCCCTGGGAAACACTTGCTGCTGCAACAGTGTGGCAATAGAG
AGCAGCGAGTTTTAATGGGAAGGGCTTTTTGGGAACTTTTTTCATGGCTT
TATGGGCTGTAATAATTGTAAATACGGAGCTGTAGTAGCTACAGAGCCAT
CAGGTGCAAGAAGAAAGCTGACGCGAAATTTAGCATGTGTGGGACAAACA
GAAGGGAAGATTACAGTTAAGTCTATAAGTCCAGACCATGCGGTGTGGAC
CAGAGCTTCCTGCCCCATTTCAGAAATTTTTCTGCTTATGAATAATTTTA
GTACTGAACATCACACTAAGGGAAGCAATTAGTGAAACACAATTCTAAAT
TTCTATAGCCGCACACACCCAAGAAATAAACACATTTTATTTTATTTTTT
CTTTAGTCCTAAATTTAACGCATTTTTTATCACAAACCTCCCTCACTTAA
ATTTCAA
TCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATAACTGTGTATTGTGCTTATTCA
CTCAGAATTAAGAAGCTAAGATTGCAAGTGAGTCTGTTGATTTGTCTGCC
ACCTTTTAATTGAGGTCCAGGCTACCTCTTCAGAGGGAATATAACATTCA
CCACAGTTACAAATAACTTGTAATATCATCTAGTCGAAATACAGAAATCT
AGCTTTATTATAGATAAAATACTGAGATGGGAGTCATGCTTATCTGTGAG
CTCTTGAAAAGATATTGTCACATGCATCAGCCAAGGTTTGGCTCACCTGC
ATCCCATGCTAGATTCTAAGCAAGGTCCCACACAGTTGCAGTGTTCATTA
ATACTAAAGGATGCTATCAGTTCTCCCAAAAACAACAGCATGTGATTGAA
AGACCATGGTATTTAAAAGCGTACATATGTACATACATACATACATATGT
AGCAGAGTATGGCCATATCTGCCATTAAAGGAGGGGAGGGAGGCTTGATG
CCCCACATAGGGGGATGCTATCGGGTTGAGGCGCCAGTGCCTAAATGGGT
GGTTATCTCCCTTCTAACTCCTTTTCTTAAACCCCTTTCCATTTCTTACC
CTCCCCCTCTTCCCATTTATTTCCCCCTTCCTTACCCCATCCCCCGCATC
TCCCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_d23.b1 MSMg01no091_d23.b1 CHROMAT_FILE:
MSMg01no091_d23.b1 PHD_FILE: MSMg01no091_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:41 2005
         (378 letters)



>mm_chr5_41094416_41095193
          Length = 778

 Score =  630 bits (326), Expect = 0.0
 Identities = 365/378 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacttgacctttgacaccagcatacaattgcatacatgttcacaagcaccaacatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacttgacctttgacaccagcatacaattgcatacatgttcacaagcaccaacatatat 260

                                                                       
Query: 61  gtgtacatatacacatacgtacatgaaaaactccaaatataaacacagacatatgaagag 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtacatatacacatatgtacatgaaaaactccaaatataaacacagacatatgaagag 320

                                                                       
Query: 121 aaacaaaactggagacatgaatacagattataaaatcgtacatagtttgcaaaaatgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaaaactggagacatgaatacagattataaaatcgtacatagtttgcaaaaatgact 380

                                                                       
Query: 181 gtgtgccctaatgtccctgggaaacacttgctgctgcaacagtgtggcaatagagagcag 240
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gtgtgccctaatgtccctgggaagcacttgctgctgcaacagtgtagcaatagagagcag 440

                                                                       
Query: 241 cgagttttaatgggaagggctttttgggaacttttttcatggctttatgggctgtaataa 300
            |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 441 tgagtttaaatgggaagggctttttggggacttttttcatggttttatgggctgtaataa 500

                                                                       
Query: 301 ttgtaaatacggagctgtagtagctacagagccatcaggtgcaagaagaaagctgacgcg 360
           |||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||  
Sbjct: 501 ttgtaaatacggagctgtagtagctacatagccatcaaatgcaggaagaaagctgacgaa 560

                             
Query: 361 aaatttagcatgtgtggg 378
           ||||||||||||||||||
Sbjct: 561 aaatttagcatgtgtggg 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no091_d23.g1 MSMg01no091_d23.g1 CHROMAT_FILE:
MSMg01no091_d23.g1 PHD_FILE: MSMg01no091_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:41 2005
         (406 letters)



>mm_chr5_41267103_41267908
          Length = 806

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataactgtgtattgtgcttattcactcagaattaagaagctaagattgcaagtgagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tataactgtgtattgtgcttattcactcagaattaagaagctaagattgcaagtgagtct 547

                                                                       
Query: 61  gttgatttgtctgccaccttttaattgaggtccaggctacctcttcagagggaatataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gttgatttgtctgccaccttttaattgaggtccaggctacctcttcagagggaatataac 487

                                                                       
Query: 121 attcaccacagttacaaataacttgtaatatcatctagtcgaaatacagaaatctagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attcaccacagttacaaataacttgtaatatcatctagtcgaaatacagaaatctagctt 427

                                                                       
Query: 181 tattatagataaaatactgagatgggagtcatgcttatctgtgagctcttgaaaagatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tattatagataaaatactgagatgggagtcatgcttatctgtgagctcttgaaaagatat 367

                                                                       
Query: 241 tgtcacatgcatcagccaaggtttggctcacctgcatcccatgctagattctaagcaagg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtcacatggatcagccaaggtttggctcacctgcatcccatgctagattctaagcaagg 307

                                                                       
Query: 301 tcccacacagttgcagtgttcattaatactaaaggatgctatcagttctcccaaaaacaa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 306 tcccacacagttgcagtgttcattaatactaaaggatgctatcagttctccccaaaacaa 247

                                                         
Query: 361 cagcatgtgattgaaagaccatggtatttaaaagcgtacatatgta 406
           |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 cagcatgtgattgaaagaccatggtatttaaaagtgtacatatgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)