BAC Information

Click to search

BAC

Clone NameMSMg01-091G23
Chromosome5 (Build37)
Map Location 102,700,698 - 102,700,934
singlet/doubletsinglet
Overlap genenone
Upstream geneCycs-ps2, LOC100040920, Nkx6-1, Cds1, Wdfy3, EG666515, EG666527
Downstream geneLOC625780, Arhgap24, Mapk10, LOC666563, 4930429D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091G23.T7 (MSMg01no091_g23.b1)MSMg01-091G23.TJ (MSMg01no091_g23.g1)
ACCAG309388AG309389
length692688
length of high quality
(start - end)
233 (131 - 363)239 (128 - 366)
definitionCHROMAT_FILE: MSMg01no091_g23.b1 PHD_FILE: MSMg01no091_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:57 2005CHROMAT_FILE: MSMg01no091_g23.g1 PHD_FILE: MSMg01no091_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTCTTTAAAGTTTTATTCTTCTAGGTAAATTTAGACTCAACTATTG
AGTCTCAGTGTAACGGTTTGTTCCCTTAACAAGTCTGTAACAACTAATGC
AATTTTCTTTTCTTTTTTTAGAGGGGTGCCTATTCTTTTGTTTTAGCTTA
AAAAAACAATAAACCTGAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTAAAACTGCAAGAGGACTTTTTATTCCAAGAGCACTC
TGGGACCCACAGTCGTACACCACACAGGGGTAGAGGACTGTGGGTTCTGA
GTAGCTAGGTAATTTTTTATTTACCACAACAAACCACAACTCAAGGGGGT
GGGGAGGGCGTTGTTGCAAAATACCAAAAAAATACCAGTTAAGAGTCGCA
AGGAAGTCACAAGTCACAAGGAAAAATACCTGGTAATTGTGCGGTTATTT
CTCAAGACAGTTTCTATGAGCCTCTAACAATTGCACATTTGCATAGCGGA
TTCAATGAATGGTCAGGGTGATCCTTTTTGAACAAACACTCCCTTGAACC
ACATAAGTGTTTGTGTTGGAGTAATGCCACTATCTTTTTTAATAATTATC
ACTGCCTTGGAACATTGAGTCCCCAATGTCATCATTCCTCAG
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTACCCACTACTGTAGACCTGCTCAG
AGGTCATAGGCTCTAGCAGTAAACCCGCTACTGTTGTTTTGCTAATAAGA
CATGTTCTCAATACATCAGTGCTGTTCCGGGTCTTCTTCAGGAAAGCTTC
CTGTTGTAGAACACAATACATAACATGGAGTCCCGTCTTGTGAGTGCTTC
AGCTGTTCAGCAGGGATGAAGGTGGATTATTTGGGCCTAAGTGGGAGATC
TGCATAACCCTCTCCAGGTCTCAGAGAGCATGGCAGGATACAGAGTGAAA
GGAAGGTAAGCAGATTATGTAGATACATGCAACACAGAGAGACATGTGCA
ACACAGAGGTGACATGCACAGCACATCCTGACCATATAAGGCTACTGCTC
TCTTGTGCTCACTGTAGCTATGGCTGTCCTCACGAGGTCTGTATAACCGG
ACCCGCCAAGACTTCATCATAAATAGGGGAGGAGCACATGAGGCCCACAC
CTCCCTGAGGTACAATTGGGAGTTAATAGTCACTGAGTCAAAGGGCATCA
CTTTTTTCTGTGGTGTAGCCACAGATAAGTTGTCAGCGTTCCACTGAAAA
ATCATCCATACAACCTCATGCCAAGAACCCTAGTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_g23.g1 MSMg01no091_g23.g1 CHROMAT_FILE:
MSMg01no091_g23.g1 PHD_FILE: MSMg01no091_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:57 2005
         (239 letters)



>mm_chr5_102700498_102701136
          Length = 639

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactgttgttttgctaataagacatgttctcaatacatcagtgctgttccgggtcttct 60
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctactgttgttttgctaagaaggcatgttctcaatacatcagtgctgttccgggtcttct 378

                                                                       
Query: 61  tcaggaaagcttcctgttgtagaacacaatacataacatggagtcccgtcttgtgagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcaggaaagcttcctgttgtagaacacaatacataacatggagtcccgtcttgtgagtgc 318

                                                                       
Query: 121 ttcagctgttcagcagggatgaaggtggattatttgggcctaagtgggagatctgcataa 180
           |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcagctgttgagcaggggtgagggtggattatttgggcctaagtgggagatctgcataa 258

                                                                    
Query: 181 ccctctccaggtctcagagagcatggcaggatacagagtgaaaggaaggtaagcaga 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccctctccaggtctcagagagcatggcaggatacagagtgaaaggaaggtaagcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)