BAC Information

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BAC

Clone NameMSMg01-091M20
Chromosome5 (Build37)
Map Location 31,982,347 - 31,982,527
singlet/doubletsinglet
Overlap geneRbks
Upstream geneDpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, LOC100040000
Downstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091M20.T7 (MSMg01no091_m20.b1)MSMg01-091M20.TJ (MSMg01no091_m20.g1)
ACCAG309653AG309654
length717718
length of high quality
(start - end)
181 (119 - 299)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no091_m20.b1 PHD_FILE: MSMg01no091_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:26 2005CHROMAT_FILE: MSMg01no091_m20.g1 PHD_FILE: MSMg01no091_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCCTATATCGAGAGATCCGCGGAATCACTGACA
TTCCTTACTAGAACAACTTATCAATTGCTTTTAACTTCTTGACAATGAGG
TGGTTGTTACCCCTACTCAAGAGATTATCTGAACAAAAGGAAGGGATGAC
CTGGTGACTGGAAGATGACAAGGCTTATCCAAAGAAGTCACACTAATACC
TACTTGGGCAAAAATCAAGAAACACGTTGCTTTTTTGTTTTTGCATTGAC
CCTTTCTTCTGGCTGCAAGCTTCTGACATATTATAAGCTTCTATGATAAG
AGATTGTACATTATTTACTACCTAATTAAAATTCATACTAATTATTCCTG
CTGCCTGTATTTTTCAGCCATTTCTCTTCTCCTCAGCATTTGTGTATGTC
ATATTTAACGGTTAAGCGTAATTTCAAAACCCAGCTGTCACTCACAAAAC
CTCGAGTCAACTTAGAGGGTGCTATGGTGAGCGAAGAAAGCCGGTATGGG
CGAGACAACACCATGTGAGCTCACTTATTTGTGTAACCCAACAGCTGAAC
TCCCACATACATGATCCTTGAAGTTACTCTATTCCGCATAGGAGAGGTGG
TCTCTGTTATTACGCCACCAGCTATTAGGCAGATGTGGCGCCTTGAATAT
GTTTGCCCCCATAAGAGCGTCTCTGCTTGGACACGTTATCTTGTTGTCAC
ATCCGTGCCCCTGTCGT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGA
AGCACCTGAAAAACTGTTCACCATCCTTAATCATCAGAGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCAGGTATGTGGAGAAAGAGGAACAC
TCCTTCATTGTTGGTGGCATTGCAAGCTTGTACAATCACTCTGGAAATCA
GTCTGGCGGTTCCTCATAATATTGGACATAGTACTACTGTAGGATCCCGC
AATACCTCTCCTGGGCGTATATCCAGAAGATGTTCCAACCGGTAAGAAGG
ACACATGTCCCACTATGTTCATAGCAGCCTTACTTATACTAGTCAGAAGC
TGTAAAGAACCCAGATGTCCCTCAATAGAGGATTGGATACTGAAAATGTG
GTACATTTACACAATGGACTACTACTCTGCTATCATTATAGACTGACTTC
ATGAAATCTCCAGGTAAATGTATGGACCTGGAGGGCCTCACCCTGAGCGA
CGTAACCCCCACCCCCAGGATTTCCCATCAAATGTACTCACTGACAAAAG
CCAATTACCCCACAAACTTATAATACCTCCTACCTAATATTTAATCTGCT
AAACCAATGCACCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_m20.b1 MSMg01no091_m20.b1 CHROMAT_FILE:
MSMg01no091_m20.b1 PHD_FILE: MSMg01no091_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:26 2005
         (181 letters)



>mm_chr5_31982147_31982727
          Length = 581

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagattatctgaacaaaaggaagggatgacctggtgactggaagatgacaaggcttat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 201 aagagattatctgaacaaaaggaagggatgacctggtgactggaagatgacaagtcttaa 260

                                                                       
Query: 61  ccaaagaagtcacactaatacctacttgggcaaaaatcaagaaacacgttgcttttttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaagaagtcacactaatacctacttgggcaaaaatcaagaaacacgttgcttttttgt 320

                                                                       
Query: 121 ttttgcattgaccctttcttctggctgcaagcttctgacatattataagcttctatgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgcattgaccctttcttctggctgcaagcttctgacatattataagcttctatgata 380

            
Query: 181 a 181
           |
Sbjct: 381 a 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)