BAC Information

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BAC

Clone NameMSMg01-092A18
Chromosome5 (Build37)
Map Location 38,212,794 - 38,213,367
singlet/doubletsinglet
Overlap geneMsx1
Upstream geneMan2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1
Downstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092A18.T7 (MSMg01no092_a18.b1)MSMg01-092A18.TJ (MSMg01no092_a18.g1)
ACCAG309830AG309831
length692714
length of high quality
(start - end)
486 (47 - 532)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no092_a18.b1 PHD_FILE: MSMg01no092_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:46 2005CHROMAT_FILE: MSMg01no092_a18.g1 PHD_FILE: MSMg01no092_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCGCGCTCTCCGCAATAGACAGGTACTGCTTCTGGCGGAACTTGC
GCTCCAGAGCCAGCAGCTGAGCTGTGGTGAAAGGCGTCCTGGGCTTGCGG
TTGGTCTTGTGCTTGCGTAGGGTGCATGCTGTGGGACTCAGCCGTCCTAG
GGGGCCAGGAGAGGGGAAAAAAAAAGCAAGGAGTTAAAGAGAGTCTTGCT
GCGGTGTTTTACTAAGGAACCGAAAACATTCCAGATATTAATTTCGTTCA
GACGCGTCTGTGCTGGTCTCTGTGAGGCACTTGAGAAATATTTCTCTTGC
CTGCTAAAATGCTAGATGAAATCTAAGCATGTTCAACGCTGGAATACAGT
TGGGCAGAGACAGCGCCACCCTACCTTAAAGTCAAGCCTTCCCCACCAGG
TGCCTCTTCTGCGCCTCTCACATTGGAAAGATGAAGGCTGGGGGCAGGGG
GTGGTCATAAAACACTCAGGGACCCTTTGCCCAGTCCAAAGTCACCCAGG
TTTCATACCATAGACCTACACTTTGTATTTGTGCCCGACTTATGCACCGC
GCTGCGGCTAGGCCTTTGCATCGCACAGAATGGATCTTGAAACTCCACAC
TTTCCATCGAACAACATGTTTCTCCTGGGCTCTAGGCGCAAT
CCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTACATTGGAATGCTTACTTGCA
ATCCCAGTGATAGAGAGATGAGAAGAAAAGACATGGGGCTCCCTGGAAGC
TGCCAGTGCCAGCTAGCCTGGCATGCATCAATGAAGCAGAAGCAGCAGGA
GAGACCCTGTGTCTCAAGATAGGGTGGAGGGCTCTATCCATGTGCCATGA
CATGAACACACCTGTGTACATACACACAAAGAAATACTGCCTTCTTCCCC
AAAGCTATATATTAAGGTGTATAAAGCCCACTGGGAAATGGGGACTCTAT
AGTATCCCGAAACTAGCAGCCCTGAGAGTCACTATCACTTTGGTTAAGAT
GAGCGGAGTCCTAAGCAACCCCAGTACCCAGGGGTTCACTGTGGCAAAAA
CACTGGGTAAGGGCTTGCCTGGCATGAACTGGGTCTGTTGTATAAAAAGG
TCCAGCCCCTGTCTTCAATACCCCCCTTTTCTTTCCTATCTTCCTCGTTA
ACCCTCCTTTTATCCCAATTATCCCTAAGTGGGCTAAACGGTCCCATTTT
TCACATTAAGCGCCCTCCTTCCTCCCACCGCCTTTAGTCTTTAGTTTTAC
TGGTCCTCCTTTCTCTTTCTAACGACTTATCCTTCCCATTTCTTTTTCCT
CCCCCTGGCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_a18.b1 MSMg01no092_a18.b1 CHROMAT_FILE:
MSMg01no092_a18.b1 PHD_FILE: MSMg01no092_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:46 2005
         (486 letters)



>mm_chr5_38212680_38213567
          Length = 888

 Score =  661 bits (342), Expect = 0.0
 Identities = 471/574 (82%), Gaps = 92/574 (16%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccgcgctctccgcaatagacaggtactgcttctggcggaacttgcgctccagagc 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gaattccgcgcgctcggcaatagacaggtactgcttctggcggaacttgcgctccagagc 174

                                                                       
Query: 65  cagcagctgagctgtggtgaaaggcgtcctgggcttgcggttggtcttgtgcttgcgtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cagcagctgagctgtggtgaaaggcgtcctgggcttgcggttggtcttgtgcttgcgtag 234

                                                                       
Query: 125 ggtgcatgctgtgggactcagccgtcctagggggccaggagagggg-------------- 170
           ||||||||||| ||||||||||||||||||||||||||||||||||              
Sbjct: 235 ggtgcatgctgggggactcagccgtcctagggggccaggagagggggaaaaaaaaagcaa 294

                                                                       
Query: 170 ------------------------------------------------------------ 170
                                                                       
Sbjct: 295 ggagttaaagagagtcttgtgcttgcgtagggtgcatgctgggggactcagccgtcctag 354

                                                                       
Query: 171 -----------------aaaaaaaaagcaaggagttaaagagagtcttgctgcggtgttt 213
                            ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 355 ggggccaggagagggggaaaaaaaaagcaaggagttaaagagagtcttgctggggtgttt 414

                                                                       
Query: 214 tactaaggaaccgaaaacattccagatattaatttcgttcagacgcgtctgtgctggtct 273
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | 
Sbjct: 415 tactaaggaaccgaaaacattccaggtattaatttcgttcagacgcgtctgtgctgggca 474

                                                                       
Query: 274 ctgtgaggcacttgagaaatattt-ctcttgcctgctaaaatgctagatgaaatctaagc 332
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 475 ctgtgaggcacttgagaaatattttctcttgcctgctaaaatgctagatgaaatctaagc 534

                                                                       
Query: 333 atgttcaacgctggaatacagttgggcagagacagcgccaccctaccttaaagtcaagcc 392
           |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||
Sbjct: 535 atgttcaacgctggaatacagttgagcagagacagtgccaacctaccttaaagtcaagcc 594

                                                                       
Query: 393 ttccccaccaggtgcctcttctgcgcctctcacattggaaagatgaaggctgggggcagg 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttccccaccaggtgcctcttctgcgcctctcacattggaaagatgaaggctgggggcagg 654

                                             
Query: 453 gggtggtcataaaacactcagggaccctttgccc 486
           ||||||||||||||||||||||| ||||||||||
Sbjct: 655 gggtggtcataaaacactcaggggccctttgccc 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 888
Length adjustment: 10
Effective length of query: 476
Effective length of database: 878
Effective search space:   417928
Effective search space used:   417928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)