BAC Information

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BAC

Clone NameMSMg01-092A21
Chromosome5 (Build37)
Map Location 133,326,565 - 133,326,820
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2, 4930563F08Rik
Downstream geneLOC100039731, LOC666038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092A21.T7 (MSMg01no092_a21.b1)MSMg01-092A21.TJ (MSMg01no092_a21.g1)
ACCAG309836AG309837
length801808
length of high quality
(start - end)
263 (90 - 352)71 (181 - 251)
definitionCHROMAT_FILE: MSMg01no092_a21.b1 PHD_FILE: MSMg01no092_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:46 2005CHROMAT_FILE: MSMg01no092_a21.g1 PHD_FILE: MSMg01no092_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCTTTCCTTTTTTTCCTTCCTCTCCTCCTCCNNCCGCATNNNNNATT
CTATAATTGCGGCGCTATACGACTCCTATAGTGAGAGATCCGCGGAATTC
AGTGGGTTTGTTTCGAAAATAGCCTATTCTCTGTCTAACATCACCACTCT
TTTTTTTTTTCAACCAATTTGCTCCGTGCTAGCTTCTGATGTCTGCATGA
GATGCGTGACAACTGCGTGTTTAAGCTGGGCTTGGGAAATTGGTCGAGGA
GGAGAGTGAACAGAGAGGCCTACACTTAAGAAGTGATCAGACAAAGGATG
CCGGGTGACAATGAGCTCCAATTTAAATCAATCACTGAACTTAGGGAGAG
CAGTAGAGGCAAGACCAGGCAATTCTGCAAAGTTCCACCATAAAACCTCA
CAAGGGAATACAGTATTTCTTACATACTACACACAGCTGTATGGCTGTGG
AGCATGAAGGAGACCCCACTTACCCAACCTGATGTCTTGCCGTATATGTT
TGTCAAGGTGCTGCGTAACATTTAATGTCATACCAGACCTCTCTTTAGCA
CTTCTATTGCATAAAGTTTTGCCTTCATTTTTTAGCCAGACCCGTGTCCG
CGGATATTAACTACATATTTAGGCCCGTAATAAATGTCCTCATACTATTT
TGGGTGCGAGTTCACATGCGTTCGTGAGCCACGATTTGTGAGTGTTGGAA
AGATAATTCGGCTCAAGAAAAACAAGGCCCTCGAACAATGAAACCATTTT
CCCCTCCCAGATGCTTGTTCAAAACAATTGCAATGAAATTTGTGCACATT
T
CTTTTTTCTTTTTCCCTTTTTTTTTTTTCCCTCTTTTCTCCTNTTTCCAC
GATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTGTAGACATAGTCCTTATAGACCT
GATTCCAGAGCCCCAAATGCTTAGTCCCGTTTCAACCTGAGTTAATCTCA
CTTAAGTGTCCCTGGTCTGTTTCCTATTCAGAAATGTCTGAATTTGACTA
GCATATATATGTGATAAAGTGCTTTTATTTATTTATCCTTCACTTAGAGG
AGACCTTGTCATAAATTCAAGCAAAAAATAATGTGCATAAAACTTTCATA
CGTCACCATTAACTTTCAGATGATAAGTATTATTGTGTTTATTAGCAATA
AACGCCGAAACATTGATTATTGTTTGCCCGACCTTCACTATGCTATATAC
AATAGTCATATATTGGGCTACAAATAGATACAGCCCACATTTACATGACC
ATAGTTCATCCACTTAAGATACACATTGGTTTGAGAGACTATCAATTTGT
TAGCCATCTCTGCCCTTTATTCTTGAAAAGGCCATAATAATTACTTTTTA
TATAGCTGCTGTATTACCTTCCTGGTAGACCTGAACTAAGTTTATTTTAC
CCTACCTTAATCAACCCAAATTATGCTTTACCCTAATTCTGCCTATTTAC
ACACTAACTTTATTGTGCATATTTTAAGTATTATGGGTGAGGGGTTATTC
TATTTTAACCGTTCATTCTCAGGCATAAATTTTTCATGACTAACCCTTCT
TTAGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_a21.b1 MSMg01no092_a21.b1 CHROMAT_FILE:
MSMg01no092_a21.b1 PHD_FILE: MSMg01no092_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:46 2005
         (263 letters)



>mm_chr5_133326360_133327020
          Length = 661

 Score =  456 bits (236), Expect = e-133
 Identities = 252/258 (97%), Gaps = 2/258 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcagtgggtttgtttcgaaaatagcctattctctgtctaacatcaccactcttttt 65
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||
Sbjct: 461 gaattcagtgggtttgttttgaaaatagcctattctctgtctaacatcaccactc--ttt 404

                                                                       
Query: 66  ttttttcaaccaatttgctccgtgctagcttctgatgtctgcatgagatgcgtgacaact 125
           |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||
Sbjct: 403 ttttttcaaccaatttgctgagtgttagcttctgatgtctgcatgagatgcgtgacaact 344

                                                                       
Query: 126 gcgtgtttaagctgggcttgggaaattggtcgaggaggagagtgaacagagaggcctaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gcgtgtttaagctgggcttgggaaattggtcgaggaggagagtgaacagagaggcctaca 284

                                                                       
Query: 186 cttaagaagtgatcagacaaaggatgccgggtgacaatgagctccaatttaaatcaatca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cttaagaagtgatcagacaaaggatgccgggtgacaatgagctccaatttaaatcaatca 224

                             
Query: 246 ctgaacttagggagagca 263
           ||||||||||||||||||
Sbjct: 223 ctgaacttagggagagca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 661
Length adjustment: 9
Effective length of query: 254
Effective length of database: 652
Effective search space:   165608
Effective search space used:   165608
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)