BAC Information

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BAC

Clone NameMSMg01-092A22
Chromosome5 (Build37)
Map Location 15,112,667 - 15,113,282
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
Downstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092A22.T7 (MSMg01no092_a22.b1)MSMg01-092A22.TJ (MSMg01no092_a22.g1)
ACCAG309838AG309839
length693694
length of high quality
(start - end)		618 (47 - 664)618 (77 - 694)
definitionCHROMAT_FILE: MSMg01no092_a22.b1 PHD_FILE: MSMg01no092_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:46 2005CHROMAT_FILE: MSMg01no092_a22.g1 PHD_FILE: MSMg01no092_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCTTTTCACGACAACTGGGTCTTTGTCAAGTTGATAAAATGTA
AGAAACATATCGTGCAAATGAAACGGAAGCAGCATTGAAAGTCTGAGTAG
CCGGTGGGCATCCCTGCACATGTGCCTGTGGGTAGCTGACAGATCAGCTG
GTTTAAAAGCAAGGCTGGTGGTCTAGTCAATCATGGTCGCTGTTCTAGTG
CTAAACCAGATTCTGGAGAAAGCTCTATTGTTGTTAAGACTTGAGAGGAG
CTTGGTGGCTGATTATGGGATGGATCCCCGGGTGGGGTAGTCTCTGGATG
GTCCATCCTTTCGTCTTAGCTTTGTCTCCGTAACTCCTTCCATGGGTATT
TTGTTCCCTATTCTGATACTACTGCATATGCCAGCAATTTTTTGCTGAAA
GGACCTTGATATAGCTGTCTTGTATGGCTATGCCAGTACCTGGCAAACAG
AAGTGGATGCTCACAGTCATTTATAGGATGGAGCACAGTGCCTCCAATGG
AGAAGCTAGAGAAAGCACCCAAGGAGCTGAAGGGATCTGCAACCCTATAG
GTGGAACAAGAATATGAACTAACCAGTACCCCCCAGAGCTTGTGTCTCTA
GCTGCATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGT

CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGAACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAGTGCA
AATTAAAACAACACTGAGATTCCACTTCACTCCTATCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGGGGA
ACACTCCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTAGACATAGTACTACCGGAGGATC
CTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAG
AAGCTGGAAAGAACCCACATGCCACTCAACAGAAAAATGGATACATAAAA
TGTGGTAGATTTACACAATGGAATACTACTCAGCTATTAAAAAAAATGAA
TTTATGGAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTTAG
TGAAGTAACCCAATGACAAAGGAACTCGCACAATATGTACTCACTGATAA
GTGGATATTAGCCCACAAACTTAGGATACCCAAGATATAAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_a22.b1 MSMg01no092_a22.b1 CHROMAT_FILE:
MSMg01no092_a22.b1 PHD_FILE: MSMg01no092_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:46 2005
         (618 letters)



>mm_chr5_15112463_15113481
          Length = 1019

 Score = 1029 bits (532), Expect = 0.0
 Identities = 596/618 (96%), Gaps = 6/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcttttcacg-acaactgggtctttgtcaagttgataaaatgtaagaaacata 63
           ||||||||||| ||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcctcttctcaggtacaactgggtctttgtcaagttgataaaatgcaagaaacata 264

                                                                       
Query: 64  tcgtgcaaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcgtgcaaatgaaacggaagcagcattgaaagtctgagtagccggtgggcatccctgcac 324

                                                                       
Query: 124 atgtgcctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgcctgtgggtagctgacagatcagctggtttaaaagcaaggctggtggtctagtca 384

                                                                       
Query: 184 atcatggtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcatggtcgctgttctagtgctaaaccagattctggagaaagctctattgttgttaaga 444

                                                                       
Query: 244 cttgagaggagcttggtggctgattatgggatggatccccgggtggggtagtctctggat 303
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 445 cttgagaggagcttggtggctgattatgggatggatcatcgggtggggtagtctctggat 504

                                                                       
Query: 304 ggtccatcctttcgtcttagctttgtctccgtaactccttccatgggtattttgttccct 363
           ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 505 ggtccatcctttcttcttagctttgtctccgtaactccttccatggcttttttgttccct 564

                                                                       
Query: 364 attctgatactactgcatatgccagcaattttttgctgaaaggaccttgatatagctgtc 423
           ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 565 attctgacactactgcatatgccagcaagattttgctgaaaggaccttgatatagctgtc 624

                                                                       
Query: 424 ttgt-atggctatgccagtacctggcaaaca--gaagtggatgctcacagtcatttatag 480
           |||| | |||||||||||| |||||||||||  ||||||||||||||||||||| |||||
Sbjct: 625 ttgtga-ggctatgccagtgcctggcaaacacagaagtggatgctcacagtcatctatag 683

                                                                       
Query: 481 gatggagcacagtgcctccaatggagaagctagagaaagcacccaaggagctgaagggat 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatggagcacagggcctccaatggagaagctagagaaagcacccaaggagctgaagggat 743

                                                                       
Query: 541 ctgcaaccctataggtggaacaagaatatgaactaaccagtaccccccagagcttgtgtc 600
           ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 744 ctgcaaccctataagtggaacaacaatatgaactaaccagtaccccc-agagcttgtgtc 802

                             
Query: 601 tctagctgcatatgtagc 618
           ||||||||||||||||||
Sbjct: 803 tctagctgcatatgtagc 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space:   613472
Effective search space used:   613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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