BAC Information

Click to search

BAC

Clone NameMSMg01-092C12
Chromosome5 (Build37)
Map Location 86,445,262 - 86,445,569
singlet/doubletsinglet
Overlap geneCenpc1
Upstream genenone
Downstream geneLOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092C12.T7 (MSMg01no092_c12.b1)MSMg01-092C12.TJ (MSMg01no092_c12.g1)
ACCAG309913AG309914
length730700
length of high quality
(start - end)
136 (47 - 182)310 (79 - 388)
definitionCHROMAT_FILE: MSMg01no092_c12.b1 PHD_FILE: MSMg01no092_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:55 2005CHROMAT_FILE: MSMg01no092_c12.g1 PHD_FILE: MSMg01no092_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:55 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGTATCTTG
TCAAATGCTTTTTCTGCATCCCCCGAGATGATCATGTGGTTTTTGTCTTT
GAGTTCGTTTATATAGTGGATTACATTGATGTATTTTCGTATATTACACC
ATCCCTGCATTCCTGGAATACAACCTACTTGGTCAGGATGGATGATTGCT
TCACTGTGTCCTTGCATCCGGGTAGCGATAATTTTATTGAGGACTTTTGC
ATCGATATTCATAATTATTATTGGTCCGAAGTTCTCTATCTTTGTTGCAC
CTTTCTTGTTTTTTTCCCTCCCCCACCCCCTCTTGTCTTCATATATAGAC
TCTGCGTCGATTTCTTTCCCACTCTAAAAAGAAAAACTATTTTGTGGCTC
GTCGTGCCCTTCATCCCTCTTTTGCCCTTCCTATCCCCCTTTTGTCTCAC
CCCCGTTTTGTTCCTGCCTTTCTCTCTTGTCTGCCTTTCTCATTCTTCTC
GTCTTTTTTATTCTCTTTCTTTCCCTTCAACTATCGCCTATTTTTCCCTC
CTCCTACTTTTTATATTCCTCCCTCCTACTCGTCCTTCCCTTCCTCTATC
CCCTCCTTTTTATTGTCTTTTCCCCACCTCCCTATACCGTCGCACCTCCT
CCTTTCCTTCTTCCTCACTCCTTTCCCCTA
CCGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATACACTCCTTTTAAAAG
AAGGAAATCAAGGCTTAGAGGGAGAGATTCAATAGTCGAGAATCATGCAG
CTTATAGTCCAGGGCGAATGTGACCTTCGGTATTCTTATTTCCAGAGTCA
GTGATCTTCTATCTGCCTGTCTATTAATACAGATAATATGTGTATTATTA
TTTTTATTTTTCCCCTAGATCTTATAAGACCACGAGATACATACCGCTTT
TTTGTTGAGCAACATGGTTTGAAAGTTTTTAAAACATTGGATACAATATA
TTTTTCTACTGGAAAATTGGCTTTAGGACCTTATGAAGAGAATGGAAAAC
AGCATGTTGGCCAAGACATATTGGTGGGTATACGTTTCCACTTACTTCTG
TTTCTCTGAAGTACAACTGATGACATGTTTACATTCTGTTTACTTGCTAC
TGAAATCTCCATAATTTCACTGTACTAAGAAATCTTTCCACTTTATTACT
TCTGTTGGACGGTAGCCACTACTTCATTTTGGCGTTACTATTGAGCAACT
TGGGCCTGCCTCTTCTGGCCATTTTATGCCACATTTTCCCTCTACTGTTT
ACTATTTGTTTACCCTATACTTACTTGCATGGTACATCACTCTGCTCTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_c12.g1 MSMg01no092_c12.g1 CHROMAT_FILE:
MSMg01no092_c12.g1 PHD_FILE: MSMg01no092_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:55 2005
         (310 letters)



>mm_chr5_86444932_86445641
          Length = 710

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%), Gaps = 2/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaatacactccttttaaaagaaggaaatcaaggcttagagggagagattcaatagtcg 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttaatacacaccttttaaaagaaggaaatcaaggcttagagggagagattcaatagtcg 579

                                                                       
Query: 61  agaatcatgcagcttatagtccagggcgaatgtgaccttcggtattcttatttccagagt 120
           ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||
Sbjct: 578 agaatcatgcagcttat-gtccagggcgaatgtgaccttcggcattc-tattttcagagt 521

                                                                       
Query: 121 cagtgatcttctatctgcctgtctattaatacagataatatgtgtattattatttttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cagtgatcttctatctgcctgtctattaatacagataatatgtgtattattatttttatt 461

                                                                       
Query: 181 tttcccctagatcttataagaccacgagatacataccgcttttttgttgagcaacatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttcccctagatcttataagaccacgagatacataccgcttttttgttgagcaacatggt 401

                                                                       
Query: 241 ttgaaagtttttaaaacattggatacaatatatttttctactggaaaattggctttagga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 400 ttgaaagtttttaaaacattggatacaatatatttttctactggaaaattggttttagga 341

                     
Query: 301 ccttatgaag 310
           ||||||||||
Sbjct: 340 ccttatgaag 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)