BAC Information

Click to search

BAC

Clone NameMSMg01-092J23
Chromosome5 (Build37)
Map Location 78,782,872 - 78,783,384
singlet/doubletsinglet
Overlap geneLOC100039398
Upstream geneIgfbp7, Pea15b, LOC669227
Downstream geneMthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092J23.T7 (MSMg01no092_j23.b1)MSMg01-092J23.TJ (MSMg01no092_j23.g1)
ACCAG310266AG310267
length692707
length of high quality
(start - end)
513 (77 - 589)46 (76 - 121)
definitionCHROMAT_FILE: MSMg01no092_j23.b1 PHD_FILE: MSMg01no092_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:32 2005CHROMAT_FILE: MSMg01no092_j23.g1 PHD_FILE: MSMg01no092_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGATGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTATGGATTACTAGGAGGAAGGATTGTGGGCCTGAAGG
GGAGAGGAACTCTGCAGGAAAACCTCAACCTCAACTAACCTGGACATGTG
GGGCTTTCAGAGACTGAATCACCAACCAAAAGGCATACATGGGCTGGCAG
ATGTATAGTGTAGTTTTCATGTGGGGTCTGAGCACAACTGGAGTGAGGGC
TATCCCAAAAGCTATTGCCTGTAAGGGGAACATATTTTTCTAGCTCGGCT
GCCTTGTCTGGTCTCAATGGGCAACGATGAGCTGAGCCTTGTAGAGACTT
GAAGTGCTAGGGTATGGTGATATCTTGGTGAATCCTACCCTCTAAGAGGA
GAGAGTAAGGGGAAATGGGGAAAAGAATTGTGGAATGAGGTGACCTGGAG
GAGGGCAATGAGTGGGATGTAAATGAATATGTAAATTAATAAATAAATAA
ATCCATATATAATCAATATAGTTATTAATTACCACAATCACATTGCGGGC
ATTATGTGTAAATTACTGTCATGTTAAAATTAATTGAAAGATAATTGTTA
CGCTCAATTATTTGCTTAGAATTTTGGGAACATTGTAGCATGAATATTTT
GCCTGTACAGAATTTTCTTAACTCTCACATTGATGGATTCTC
AACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGGAGTACCAAAAGGCATATT
AAATATGTAAACACTTCTTTTGTCACATTGAGTAGGTGAATGAAAATAGA
CACATAGTTTGAAATGTGTATAATTTAGAGGATGGGGCCTCAGTGCAGAT
CTGTGTCAAGCCTACTAAATAAATATGATGTTATCCCAAACTGATAGGCA
TTAGCTTACAACAAACTGTTGTCTGAGGTTTAAACCCAGCCCAAGGCCTG
ATTTTAAGAATAAAGTTTTATTATTATGCAGTCATATCCATTAATTTGCA
CCACCCCTTTTTTTCTTTCTCCCCCCCCCCCCACACACAAACATTCACTT
TATATTCCATTATGCCATACCAAAAAAGTATTAAAACTATTTGTGGGGGG
GGGGGCCAACATGTTTATAGTCTGCCCTATACTCATATTGTTTACCTCCT
GTTCCCCTTTTCAATGTGCCCTATACGATTCCTCCCCTTATTCTACCCCC
TATTTTTTTCTTTTTCGCCGCTTATATAATCTATTCTATTTGTAATTTTC
TATATACCCTGTCTTCTTTATCTTCCTCTCATAAACACTCTCCCCTGATG
AGTGTTTTCGTTTATACATCTACACTGTCCTTCACCACTTCTTTTGATCC
TTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_j23.b1 MSMg01no092_j23.b1 CHROMAT_FILE:
MSMg01no092_j23.b1 PHD_FILE: MSMg01no092_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:32 2005
         (513 letters)



>mm_chr5_78782672_78783584
          Length = 913

 Score =  901 bits (466), Expect = 0.0
 Identities = 502/516 (97%), Gaps = 6/516 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggaaggattgtgggcctgaaggggagaggaactctgcaggaaaacctcaac---ctca 57
           ||||||||| |||||||||||||||||||||||||||||||||||||  ||||   ||||
Sbjct: 201 gaggaagga-tgtgggcctgaaggggagaggaactctgcaggaaaac--caacaaactca 257

                                                                       
Query: 58  actaacctggacatgtggggctttcagagactgaatcaccaaccaaaaggcatacatggg 117
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actaacctggacatgtgaggctttcagagactgaatcaccaaccaaaaggcatacatggg 317

                                                                       
Query: 118 ctggcagatgtatagtgtagttttcatgtggggtctgagcacaactggagtgagggctat 177
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctggcagatgtgtagtgtagttttcatgtggggtctgagcacaactggagtgagggctat 377

                                                                       
Query: 178 cccaaaagctattgcctgtaaggggaacatatttttctagctcggctgccttgtctggtc 237
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cccaaaagctattgcctgtaaagggaacatatttttctagctcggctgccttgtctggtc 437

                                                                       
Query: 238 tcaatgggcaacgatgagctgagccttgtagagacttgaagtgctagggtatggtgatat 297
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcaatgggcaatgatgagctgagccttgtagagacttgaagtgctagggtatggtgatat 497

                                                                       
Query: 298 cttggtgaatcctaccctctaagaggagagagtaaggggaaatggggaaaagaattgtgg 357
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 498 cctggtgaatcctaccctctaagaggagagagtaagggggaatggggaaaagaattgtgg 557

                                                                       
Query: 358 aatgaggtgacctggaggagggcaatgagtgggatgtaaatgaatatgtaaattaataaa 417
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 558 aatgaggtgacctggaggagggcaatgagtgggatgtaaattaatatgtaaattaataaa 617

                                                                       
Query: 418 taaataaatccatatataatcaatatagttattaattaccacaatcacattgcgggcatt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taaataaatccatatataatcaatatagttattaattaccacaatcacattgcgggcatt 677

                                               
Query: 478 atgtgtaaattactgtcatgttaaaattaattgaaa 513
           |||||||||||||||| |||||||||||||||||||
Sbjct: 678 atgtgtaaattactgtaatgttaaaattaattgaaa 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)