BAC Information

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BAC

Clone NameMSMg01-092P01
Chromosome5 (Build37)
Map Location 29,644,780 - 29,644,906
singlet/doubletsinglet
Overlap geneLmbr1
Upstream genePrr8, Shh, LOC100039258, Rnf32, EG664949
Downstream geneEG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092P01.T7 (MSMg01no092_p01.b1)MSMg01-092P01.TJ (MSMg01no092_p01.g1)
ACCAG310507AG310508
length713738
length of high quality
(start - end)
194 (127 - 320)127 (127 - 253)
definitionCHROMAT_FILE: MSMg01no092_p01.b1 PHD_FILE: MSMg01no092_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:58 2005CHROMAT_FILE: MSMg01no092_p01.g1 PHD_FILE: MSMg01no092_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATTCAATTCCCCAATACAAAGACATAGACTAACAGACTGGTTACATAAAA
GGACCCAACATTTTGCTGTATGCCCGAAATGCACCTCAATATTAAAGACA
GACACTACCTCAGAGTAAAGGGCTGGAAAACAATTGTCTAAGCAAATAGT
CCCAAGAAACAAGCTGGAGTAGGCATTCTAATATCAAATAAAATCGACTT
TATACCAAAAGTTATCAAAAAGATAAGGAAGGACACTTCATACTCATCAA
AGGAAAAATCTACCAAGATGAACTCTCAATTCTGAACATCTGTGCTCCTA
ATGCAAGGTCATTTTTATTCATTACAGACCCTTTATTAAAGTTCAAAACA
TACATTACACCTCACACAATACTAGTGAGAGACTTCAACGCCCCATACTC
AGCATTGGAAGCAGAAACTAACCAGAGACATAGAGAAACTAATAGAAGTT
ATGATACAAATGGATTTAACAGATAGCTACAGAACCTTTCATCCTGAAAC
CAAAGAATATACCTTTCTTCTCAGCACCTCATGGTACCTTTCTCCAAACT
GACCATATAATCAGGTTCCAATTCAGCCCTCCCTCAGATTCACGAAGATT
GAACTAATCCCCTGCTTCCTATCTGGATATTCCCCCTGTACTAACGCTGG
TCCTTCATTACCN
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGATATATTGTATATTAGCCTTCTGT
TGGGTGTAGGGTTGTTAACCATCTTTCCCCAATTTGTTGGTTGCTGTTTT
GTCCATACATGGCTTTAAAAATCCTTGTTCTAAGCACATATTTAAGCATG
CTTGTCTCTCGAAACCCTTCGCGGGTCACCATGTCCTTTTTTGTCTTTCA
TGGCACTGAAGTGTTGACTGTTTGGACAGTGTACTCCACATTATCAGACG
CTGGATGCCGGTTCCTGGTCACTAGGTGGCTAACGTTTGTCATCACGTAT
AGTCCAGTTAATTCTACTTCATCACGTAGTGTTTGTGGTGACCACCATTG
CTCTGACTTGTTAACCCACCGTATGAATGTGTGCCACAAAAAACCCACAT
AAATACCTCGCCCGCCTACTGCTAATCATGGCACAAACAGTCTGCGATTT
TGCATTTATCAGTGTGGTCTAATACTTTATCGTCGTTCCCATAACCCCGC
CATTCTTCTGCCCCACCTAAATATATGGTCACCACCCAATCCTATATCTT
GATTGCTTCTTTTTTCCCTTATTCCTGTTCATTCCATTACCCAGCACCTC
TCCCCCACCTGCCCCCCCCTCATGCCCTCCCTTCCGACGCACCTCCATCG
ACTATTATCTATCGTAACAGTCTTCAACTATTACCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_p01.g1 MSMg01no092_p01.g1 CHROMAT_FILE:
MSMg01no092_p01.g1 PHD_FILE: MSMg01no092_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:58 2005
         (127 letters)



>mm_chr5_29644580_29645106
          Length = 527

 Score =  230 bits (119), Expect = 2e-65
 Identities = 125/127 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccaatttgttggttgctgttttgtccatacatggctttaaaaatccttgttctaagca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 327 ccccaatttgttggttgctgttttgtccatacatggctttaaaaatccttgtcctaagca 268

                                                                       
Query: 61  catatttaagcatgcttgtctctcgaaacccttcgcgggtcaccatgtccttttttgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 catatttaagcatgcttgtctctcgaaacccttcgcgggtcaccatgtcctttttcgtct 208

                  
Query: 121 ttcatgg 127
           |||||||
Sbjct: 207 ttcatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)