BAC Information

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BAC

Clone NameMSMg01-093C23
Chromosome5 (Build37)
Map Location 73,900,093 - 73,900,291
singlet/doubletsinglet
Overlap geneDcun1d4
Upstream geneNfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733
Downstream geneBC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b, Scfd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093C23.T7 (MSMg01no093_c23.b1)MSMg01-093C23.TJ (MSMg01no093_c23.g1)
ACCAG310693AG310694
length1,4091,311
length of high quality
(start - end)
39 (21 - 59)208 (117 - 324)
definitionCHROMAT_FILE: MSMg01no093_c23.b1 PHD_FILE: MSMg01no093_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:28 2005CHROMAT_FILE: MSMg01no093_c23.g1 PHD_FILE: MSMg01no093_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATTCATCTT
CATCTTTTCTCCATTTAAGATTTTCCTGTTACCTTCTCTGTCTCACTCTG
CCTTTAAGTTCTCCACCCATTTCTACTTCCTCACACTTCAACCCAAACGA
GTCTCAAAAGTCAATTTCTACTTCCCTACCTGTACTTTCCTCTGGAGTTC
TCCCGTTTGTGGGGTTTGGTGGTGACGACCGATTTAATTTACTTTTTCTT
TAACTTTCCTATACCATTTCAACTTTCTCTATTTCCTTTTCCTTTCTTTT
CCTTTTTTATTTTTTTTTATTTCTTTCTTCAATTTTATTTTTTTTTCTTT
ATACTTTCTTATTTCTCACCTTCACTCCTTATTTTTTTTTTTACATTAAT
CCTTCTTTTATTTTTTTTTTTTCCATATTTTTCCCCTCCTTTTTTTTCCC
CCCCCCCCTTTTTTTCTCTTTTTTCCTTTCTAAAAAAAAATATGTTTATT
TCTCTCTCTCATTTATCTTTTTCTTTTCTCTTTTCTATCTTTTTTTTTTC
TTCTACTTATTCCTTTCTCTTTCTCTTTTTTTCCTTATTTTCTTATTAAC
CTTTTCTCTCTTCTTTCTCTTTTTTTTTTTTTCCTTCTCATTTTTTCTAT
TATCTTCTAATTATTTTTTTTCTTTCTCTTTCTTTTATTATTTTTTTTTA
TTTTTTCTTTTCTTTTTATTTATTATTTTCTTCCTTTATTTCTCTTCATC
TCTATTTCTTATTTTTCTATTTCTCTTTAATTATTCATCTATTTTTTTAT
ATCTATTCAATTATATTTCTTTTTTTACCTATCTTCTTTTAATCCTATTT
AATTTTTTTTTCTTCCCCTTTTCTTTTTTTCTTCTTTTTCTTTCACTTTT
CTTCTTTTCTTTCATTATTTTTTTTTACTTTTCTTTTTTCTTCATCTTTA
TTTTTATATTTTTTTATTTTCTTTAACTTCTTTTCATCTTTTTTTTCTTT
TCTTTCATTTATTATTCTTATTTTTTTATTGTTATTCTCATTTTTTTACT
TTATTATCTCCTTTATTATATTACTTTTTTTCTTAATTTATTTTCTCTCC
ATGTTTCTATCTATATTTTTACCCTTCTATCTTCTACTCTCTTACCAACC
TCTATAATTTTCTTCATCTTATTTCTATTTTATATCTTTCATCTCTACTA
TTATTCCTTGCATCTTTTTACTTCTATTTTATTTTTTCTTTATCTTTCTT
TTTCTCATATCCTATTCTTCCTTTATTCTTCTCTTTATCCTGCTATCTAT
TGGTATTTTTTTTCTATATTCCTACTCACTACTTTTTTTATTATTTTTAT
TTTATTATCTCTTTCTTTTCTTTATACTGTTTCATTATATTTTGCTCTTT
TTACTTCAT
TTATCACATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCTTTAAAGTAAGGAGAGTTGCTTTCTTATCTTG
TGTGTCCCCCTTCTTTACTATGCCCGAGGAAGGTTTAACAACCTCAGTTT
GTTTTGACACTTACCCAAGGTCTGTCATGCCCTGAACCACAGGCTTGAGA
AGTGACATATGGTGGCCACAGGGATGCATGTTAGATGTTCCTAAACCTTT
GACACATCCTTTCTGGCTTCTCTTCTGTTGTCCTCTGTGGCAAGACAGGC
CATCGTCTCAGCTTTAGTTTAGGGTGTTATCTGTGGAGCATAGTGATACT
GGAATGTGTTCACCCATTTTCCCGTTCCTAATCAAATAAATACTATTTTT
TTTTTTTGTGCTCCTTATCCTCTGCTCAATTTTATGTGACTCTGTCCCTC
TTTTTTTTTTCCCCCCCCTTCTTTGATCTGTTTATTTTATATAAATATTT
TGGTTCGCATATCCTTCTTTACTTTTCTTCCCTTTATTTCTTTCTATGTT
TTTTTTTTTTTCTGTCAATCTCTTTCTCCTTTTTTCTCCTTGTTTTTTTT
TTCCTTTTTTTTTTTTTTTTCTCCTTTTATTCTGTCTTTTGTTCATTTTT
TTATCTTTTTTCTCTTTTCTCTACTTTTTCTTTCTTTTCCTTTTTTTTCT
TTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTATTTCTCTTCTTATC
TTTTTATACTCTTTTTCTTTTTTTCTTTTTTTTTTTTCCTCCTTTTTTTC
TCTATTCTTTCTTTTTATTTTTTTTCTCTTTTTTTTTTTCCTTCTCTTTC
TTTTTCTAATTTCTTTTCTTTTTTCACCTATTTCTTTTTTTATTCTTCTC
TTTCTTCCTTTTTTTTTTTCTTTCTTTTTTTTCCTCTTCTTCTTTTTTCT
TTCTTTTTTTCTCTTCTTTTTTCTTTACTCTTTTTTTTTTCTTTTCTTTT
TCTCTTTTCCTTTTTCTTTATTCTTCTTTTTTTTTTTTATTTTCTTTCTT
TATTTTTCTTTTTTTTATGCTCCTCTCTCTCTCTTATTTTTCCTCTCTTT
ATTCTCTCTTTTTTCTTTTATTTTTTTCATTTTCTTTTTTTATTACTCTT
CTTTGTTTCTTTCTTTTATCTTTTCTCTTTTTTTTATTTTTGTTCCTTCT
TTTTCTACTTTAATTATCTCTCATCTTTTTTCTTTACTCTTCATTTCTTT
CTCTTTTTTTCTCTCTATATCATCTTTACTTTTATTTCTATATTCTTTTC
CTATCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_c23.g1 MSMg01no093_c23.g1 CHROMAT_FILE:
MSMg01no093_c23.g1 PHD_FILE: MSMg01no093_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:28 2005
         (208 letters)



>mm_chr5_73899884_73900491
          Length = 608

 Score =  369 bits (191), Expect = e-107
 Identities = 197/199 (98%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaggaaggtttaacaacctcagtttgttttgacacttacccaaggtctgtcatgccctga 69
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 210 gaggaaggtttaacaacctcagtttgttttgacacttacccaaggtctgtcatggcctga 269

                                                                       
Query: 70  accacaggcttgagaagtgacatatggtggccacagggatgcatgttagatgttcctaaa 129
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 270 accacaggcttgagaagtgacatatggtggccgcagggatgcatgttagatgttcctaaa 329

                                                                       
Query: 130 cctttgacacatcctttctggcttctcttctgttgtcctctgtggcaagacaggccatcg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctttgacacatcctttctggcttctcttctgttgtcctctgtggcaagacaggccatcg 389

                              
Query: 190 tctcagctttagtttaggg 208
           |||||||||||||||||||
Sbjct: 390 tctcagctttagtttaggg 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)