BAC Information

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BAC

Clone NameMSMg01-093E07
Chromosome5 (Build37)
Map Location 4,909,574 - 4,909,699
singlet/doubletsinglet
Overlap genePftk1
Upstream geneAkap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093E07.T7 (MSMg01no093_e07.b1)MSMg01-093E07.TJ (MSMg01no093_e07.g1)
ACCAG310757AG310758
length1,4371,414
length of high quality
(start - end)
125 (111 - 235)169 (120 - 288)
definitionCHROMAT_FILE: MSMg01no093_e07.b1 PHD_FILE: MSMg01no093_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:40 2005CHROMAT_FILE: MSMg01no093_e07.g1 PHD_FILE: MSMg01no093_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCCTGGATG
TACATAACCCCTTCTGACGAAATCGGCTCCCCCTTGCCTCCCCTCCAACC
CTTTCAAAATCCCACCCCTTTCCTCTCCCAACTTTATGTGATCTTTTATC
TGCTAGCATTAAATGTATCTTATCCCCATTCATTCCTGATCTTAGTCCTC
CTAATTTTGTGGCTTTTAATTTGTATTGCACGTTTATTTGTGTGTGTGTG
TGTGTGTGTGTTGTCTGTCTATTTTTTCTTTTTCTTTTTTTTACTTTTTA
TATCTCTCCTTCTTCTTTTTTTCCTTCTTTTATCACTTCTTTTTCTTTTC
TTATTTTTCTTTTTTTTTTCTTTCTTCTCTCTATTATACCCTTTTTTTTC
TTTTTTCTTTTTCTCTTTCTCTTTTTTTTTTTCTTTTTATTTTTTTCCCT
TTCTTTTTTTCCCCCCCCCCCTTTATTTTTTATTTATTTCTTTTAAAAAC
CAAAGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTCTTTTT
TTTCTTTTTCTTCCTCCATTTTTTTTCTATTTTATTAATTTTTATTTTTT
TAATTTCTTCTTTCTTTTTTTTTCTTATTTTTCTTCTTTTTTTTTTTTTA
TCTTTTTTTTTTCACTTATTATTTTTTTTCTCCTTCTCTTTTTTTCTTCT
TTTTCTTCTTTTTTTATTTTTTTTATCTTTTCTTTTTCTTATTTTATTTT
TTTTTTTTTTTTTTCCATTTCTATTTTTTTTTTTATTCTTTTTTCTTTCT
TTATTTCTCTTTTTTTCTTTTTATTTTTTTTATTTCTCTCTTTTTCTTCT
TTTATTTTTTTCACTCATTCAATTTATTTTTTTTTTTTTTTATTCACATT
TCTCATCCTTCTTTCTTTTTTTTTTTCTTCCCCTTTTCTTTTTCTTTCTT
TTTCTTTCTTCTTTTTTCACTTCTTTCTTTCTTCTTATCTACTTATCACT
TTATTTCTTTCTCAATTTTATTTTTATTTTTTTATTTTTTCATTTTTTCT
TTATTTATTTCTTCTCTTTTTTCACTCTTATTTTTTTTTTTTTATTTTTT
TTCTTCTTTTATCTTTTTTNTATTTCTTTCTTTATCTATATCTTACATTA
TTTCTTTAATTTTTCTCCTATTCTTTATCTTTTTTTTTTTTTCTTTTTTT
TTCTCCATTCTTCTTTTCTCTTATTCCTTCATTCTCTCTTTATTCTATTT
TTTTTTATTTTCTTTTTTGTCCTCTATATTCCTTATTCTCTACTTTTATA
TTTTCTTTAATTATCCTACTTTTCTCTCTACTCTTCTTTTATCTTTNTCC
TTTTTTTCTTATTTTACTCCGTTTTCTTTATATTTCTTTAAGTTTTATTT
CTTTCTCTTCTATTCTTCTATATCTCTTTTTCTTTTT
NTCACCAAGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTTTTAAGCTAGGTCCAGTTTCTCATCTCGTATCCAA
CATCCCCTTAGCTCAGTTTCTTTTCTTTTCTTTTCTTTTTTTTTTTGTTT
TTTTAATTAGGTATTTATTTCATTTACCTTTCCAATGCTATCCCAAAAGT
CCCCCACCCGCTCCCCAACCCACTCCCCCACCCACCCACTCCCACTTCCT
GGCCCTGAAGTTCTTCTGTACTGAGGCAGATAAAGTTTGCACAACCAATG
GGCCTCTCTTTCCACTGATGGCCTTCTATGCCATCTTCTGATACATCTGC
AGCTAGACACAATAGCTCTGGGGGGTACTAGGCAGTTCATATTTTTTTTT
CTCCTATAGCGCTGCAGATCCCTTTAGCTCCTTGGATACTTTCTCTATTT
TTTCCCCCGCCCCCCTTTGTGATCCATTTTATACTAATGATATGTGATTA
TCCTATTTATGATGTTTGTTCGCTTCTCGTTTCTATTTTCTTCACCACTA
CTTTACCATTCTGATTCTTTTTCTTCAATTATCTTGTTTACATCTTTTTC
TATGTACTCTTTTTTTTCTTTATATTTCATTTACTTTTATGTTTCCACTT
TTATTATGCTTTTTCTTTATTATTTTTCTTTTCATTTTAATTCTCAATCT
CTTTTATTTTTCTTTTTCCTTTTTTTTTCTTTTCTACTTCATTATTTTTT
ATTTTAATATTCTTTTTATTTGTTTTTTCTTTCTCTTTCTTTTCTTTCCT
TTTTTTTTTTTTTTCTTTTCTTTTTTTTCTTTCTTTTTCTTCTGTATTTC
TTTTTTTTTCTTTTACTTTTCCTTCTTTTCTCTTTATATCCTTAATCTTT
ATCTCACTACTTACTTATCTTAATATTTTTCTCCTATGTTTTTTTTCTCT
TCTTTTTTTCTCTTTCTTTTAAATTCTATTTTTATTCTCTTCTCTACTTT
TTTTTATTTATGTTTCTTTTCAATCTTACTATTATTCTTCTTTTTTTTTC
TCTTTTTTTTTTTATTGTACTCTTTTATATCTTTTATTCTCTTTCTTTCA
GTATTTATTAGGTTTTTCTTATATTTTTCTTTTATATTCTATCCACCTAT
TCTTTATCTACNCTTTCTCTATATACTTCTTTCTGTACTTTTCTATTTTA
TAATCTCCTCTCTTTTTATTTTTCGTTATTATTTATATATTTCTTCTTTT
TTCTAACTCTAGTTTCATTATTTTCTCTTAGTTTTCTAATTCCTATATCT
CTATATTTATCTTNTTTCTATATCTCCCTAACTATTCTTATTTAAATCTT
CTATTTCTACTTCTTTCCTTTAATTCACTTCTCTCTCCTCACCNTTTCTT
CTCCTGTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_e07.b1 MSMg01no093_e07.b1 CHROMAT_FILE:
MSMg01no093_e07.b1 PHD_FILE: MSMg01no093_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:40 2005
         (125 letters)



>mm_chr5_4909374_4909899
          Length = 526

 Score =  190 bits (98), Expect = 3e-53
 Identities = 119/126 (94%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacccctttcctctcccaactttatgtgatcttttatctgctagcattaaatgtatct 60
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 326 cccaccactttcctctcccaactttatgtgatcttttatctgctagcatcaaatgtatct 267

                                                                       
Query: 61  tatccccattcattcctgatct-tagtcctcctaattttgtggcttttaatttgtattgc 119
           |||   |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatatgcattcattcctgatctatagtcctcctaattttgtggcttttaatttgtattgc 207

                 
Query: 120 acgttt 125
            |||||
Sbjct: 206 tcgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 526
Length adjustment: 8
Effective length of query: 117
Effective length of database: 518
Effective search space:    60606
Effective search space used:    60606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)