BAC Information

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BAC

Clone NameMSMg01-093E12
Chromosome5 (Build37)
Map Location 59,656,542 - 59,656,722
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC100041425, LOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093E12.T7 (MSMg01no093_e12.b1)MSMg01-093E12.TJ (MSMg01no093_e12.g1)
ACCAG310767AG310768
length1,2921,225
length of high quality
(start - end)
---245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no093_e12.b1 PHD_FILE: MSMg01no093_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:42 2005CHROMAT_FILE: MSMg01no093_e12.g1 PHD_FILE: MSMg01no093_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGGGCCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATC
TTTCCAGACCCTTAAATGAATGGGTGTTGGATTTTGTCAAATGCTTTCCC
TTTATCTAACGAGATGATCATGCCCTTTTTGTCTTTGAGTTTGTTTATAT
ATTGGATTACATTGATGGATTTCCGTATATTGAACCATCCCTGCATCCCT
GGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGATGTGTTCTCA
CCCTTCTCATTAGTCTAAAATATTATATAATACCTTGGCCGTGACCCTAA
CTCATGAATGTGATTGATTTGTATGAAAAGAACTTCACGTCTTTCTTGAA
TGCCATTATTTTATCATCTCATAATATGTAAAGATCTCTTTTTTTTTTTG
CATTGTCATCACCATCTTTGTATAATTGCTTATTTTTCCCCCTCTTTTCC
TTTTCCTTCTATGTATTCCTCTTCTTTTTTCCATACTCTATCTCTTCTTT
TTTATTATATTAGCTTTCTTTGCTCTTATTTTTCTTTTCTTTTCTTTTCT
TTTCTTTGTTTATTTTCTTTCCTCTTCCATATTTTTTTCCACCCTCTTTT
CTTTTATTTTTCTTTTTCCGTTATTTTCTTTTCTTTTCTTTTCTCTTTAA
TTTTTTTTTCTTTTTTTGCTTTATTATTCTTTCTTTTTATTTTCTTTTCT
TTCTTCTTTTTCTATCTTCTTTTTCCAATTTTTTTTATTTTTCATTTTTC
TTTCTTTATTATTTCCCTTCATTCTCTTTATTTATCTTCCTTTTTTCTTA
TATATTTTCTTTTTTTTCTTTTTTTTTTTCTTCTTCTATTTTATTTCTTT
TCTTCTCTATTTTTTCTTATCTTTCTATTTCTTCCTTTTTTTTTTTTTGT
CTTTTATCTTTTCTTTTTTTTACTTTTTTCTTTTCTTCTCCTTTTGTTCT
CTTTTCTTTTTCTCTCTTTTTTTTTTTCTCTTTCTTTCTTTTTTTTCTTT
TTTTATTCTCTTTTCTCTTTTTTTCTTTTTTTTTTTCTTATTCTTTTTCT
TTTCATTCTCTTCTTTATTCTTTTTCTTTATTCTTTCTTCTCTTTCATGT
TTCCTTTATATTCTTTTATTTCTCCTTTCTTATTTTCCTCTTTTTTCTTT
TTACTTCTTTCTTCATTTTATTCTTTTTTCCCTTATTATCTATTTTCTTT
TTTCTTTTTTTTATTCTCGTCTTCTTTTTNTCTTTATTTATCTATTTCTC
TAATTGTAACTTTCCTTTTTCATTCTTTTCTTTTCTTCTTTA
TTTTTCATCAATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTTTAACCTGATGCAGAACTAATGAATGGTT
GTCATGCTCCCTATAAATTCATCCCTCTGGTGACCACTCATACCAGGAGA
TTCGTGTTATACATATTATTGTAATTAGTATTGTTTTTCCTTTAACATAA
CATGGGAGGCAATTGTTAGAAACCCAGGGCTTAATTACAACCTAAAAGAC
TGTGAGCCATCAGTCTTAAGGATCAAAGTAAAACTTTATGGATTAATCTT
CAATTTTAAAAACCTTGTGTCTACTGTGCTTTTTATGGTTTCTATGTCTT
TAAATCCTAAGTAGTGACAATCAATAACTATTTAAGGTTGCTAACAACTT
TTTTAAAAATACCAATATAACCTTAATATGTTCTAGATTTGATTGCTTCA
TTGTATTCTTCATAAATTTTTAAAATTTTATAGTTTCTATTTTCTATGTG
ATATTTCCTTTTGTTCATTATCATCATTTTCTTTTTACCTATGTTTTTAC
TCTTTGCTTTCTTCGATTTTATTTTATTGTTTATCATTTTCCTTTTTTTT
TCTCAATATTTTTCTCCTTTATTACTTTCTTATTTTTTCTTTATATCTTT
TTTTCCTTTTTTTTATTTCTTTCATTTCTTTCTTTTTTTTTTTTCTCTTT
TTTTCCCTTTATTTATTTTTTTGTTTCTCCTTTCTTTTTCTTTCTTTTTT
CTTTTTTCTTTCTTTTTCTTTTCCTTTTTTTTTACTTTTTATTTTATTCT
TTCTTCATATTTTTTTTTTTTTTACTTTTTTCCTTTTTTTTTTTTTTTTC
TTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTCATTTTTTTTATTTTTTTT
TATATTTTTTTATTTTTTTTCTTTTTTCTTTTCTTTTTCTTTTTTCACTC
TTTTTCTTTCTTTCTTATTTTTCTCTTCTCTTTATTTATATTTCTATTCC
ATTTCTTTTATTCTTTTTTTCTTTTTATTTATTTTTTTTTCTTTCTTCTT
TCTTTTCATTTTTTTAATTTCTTCTCTCTTCTATCTATCATTTTTTTCTT
TCTTTTTATTTATTTCTCTCTCTTTCTTTTCCTTTACTCTCTTCGTATTT
CTCTATTTTTTTTTAATTTTTATTTCATTTCATTTACATATTTTTTTATT
ATCACAATATCTATCACTTTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_e12.g1 MSMg01no093_e12.g1 CHROMAT_FILE:
MSMg01no093_e12.g1 PHD_FILE: MSMg01no093_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:42 2005
         (245 letters)



>mm_chr5_59656342_59656985
          Length = 644

 Score =  282 bits (146), Expect = 1e-80
 Identities = 173/182 (95%), Gaps = 1/182 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatgcagaactaatgaatggttgtcatgctccctataaattcatccctctggtgacca 60
           |||||||||||||||||||||||||| |||||  |||||||||||||| |||||||||||
Sbjct: 201 ctgatgcagaactaatgaatggttgtaatgctgactataaattcatcc-tctggtgacca 259

                                                                       
Query: 61  ctcataccaggagattcgtgttatacatattattgtaattagtattgtttttcctttaac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 260 ctcataccaggagattcgtgttatacatattattgtaattagtaatgtttttcttttaac 319

                                                                       
Query: 121 ataacatgggaggcaattgttagaaacccagggcttaattacaacctaaaagactgtgag 180
           ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 ataacatggaaggcaatggttagaaacccagggcttaatgacaacctaaaagactgtgag 379

             
Query: 181 cc 182
           ||
Sbjct: 380 cc 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)