BAC Information

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BAC

Clone NameMSMg01-093F11
Chromosome5 (Build37)
Map Location 14,153,846 - 14,243,417
singlet/doubletdoublet
Overlap geneSema3e
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093F11.T7 (MSMg01no093_f11.b1)MSMg01-093F11.TJ (MSMg01no093_f11.g1)
ACCAG310812AG310813
length1,2641,214
length of high quality
(start - end)
320 (73 - 392)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no093_f11.b1 PHD_FILE: MSMg01no093_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:50 2005CHROMAT_FILE: MSMg01no093_f11.g1 PHD_FILE: MSMg01no093_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,153,846 - 14,154,164)(14,243,041 - 14,243,417)
sequence
CATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAG
ATTTCTGAGCAACCTTATAGCAAATATTCCAGATTAAAAAGTAGATTATA
GACCCCTGTTACACGTAATCTCAGTTTATTCAACCCAACACATAGCTAAT
CAGACTACTTCTGTTTATTCTTCCTTTCATGATTATGCTTTCAGGTTTCC
CTTAAATCTCCAAACTATTATTATTATTATTATTATTATTATTATTATTA
TTGTTGCAGAACATTCCCTGGTCTTTTCTTATCCTTCTGTATAATTTTGA
TTCCTATACTGAATTATGATTGACTATGTACTGGTCAATCTACATGCTAA
AATGGCTCATACATGAAGGTCCTGATTAGGTCCATCTATGATTATGTACG
TAAGTCAAATAACCTAGTGTGGTGGTTTAATGATAATAGCGTCCATAGGC
TCCCATGTCTGAGCATTTGGTTTCCAGTTATTATAACACAAGGCATTATG
AGGTCTGCCTTTGCATAAGGAATATTCACCCTCTCTCCCTGTCTCATGCT
GTTTGTGGTTTATGATGTGAGCTCTCATCTGCTCCATCTCCATGCCCGCT
TGTTCCCTGTTATGTTCTCCGCTTCCTACATGTGTGATATACTCTTACTT
CTCTGTAATCTTATGCTCTAATTATATTCTCTTTATATACGCCTTGGTTA
TGATGTTTTTTCATCATTTTTTTTCCATTTTTTGCTACTCTTTACAGTGT
TATTTTTTTTCTTTCCTTTGTTTGTTTTATATCTTACAACTTTATTCCTT
TTTTCTCATCTTTAGTCCCTTTTTTTTCTCATTCCTTTTCTTTATTTTTT
TGGTTTTATTTTTTCTTTTCATTATCTTATATTTTTTCTTATTTTTTTCC
CCCCTTTTCTTTTCTATTTTCTTTTTTTTTTCTTCTTTATTCTTTTTTTT
CTTTTTCCCCAGGTGTTTTTTTTTTAGTTCATTTCATATAATTTTTCTTA
TTTTTATTCTTTTTTATCTTCATCTTTTACTTCTTTTTATTGTATTTCTT
ATTTCTCTTTTCTTTTATTATATTTTTTTCTCTCGCTTCTTTTATTCTCT
CTCCTTTATTTTTTCTCTTATATTCTCCTCTGTTTTATTCCTCTATCTTG
TTAACTTTTTTATTATTTGTTATTATCTGTTATACTCATCTTTACATATT
CTAATTTATGTACTCTTATCTCCTATATTTTCTTTTATATCTATCTTTAT
ATATCTATTACCTG
NNNGGAGGATCGTGAGCTGGGGCGTXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATATATCAGTAGCTATATATGTGAGGGAA
ATTAGCATGTAATTGGGAAGGAGGTAGGCAAAATCAGCAAGATGGGAAAG
AAGCTCCGAGTTGAACACTGATGGATGCACCGATGGATGCACTATGTCGG
AACGACTTCCAAATGAGGCAGATTACATTGAGTTCCAAATGAGAACCAGA
GCTCCCAGAGTGAAGAAGTCTCCTGATGAAAGAATTACTTCTGTCTTCTG
AAACCTTCTGACTGCAGCAACTGTGGACTATTCCCAGGTCCCCTCCTGCC
AAGTGTTATGATGGAATTTACAAAGCATTTTATCTCACATTTGGTATTTG
TAAATGTATTGGCAATGGGTAAACAGCTTAATTCGGTGCGGTATGCTTTT
TTTTCTCCCCCCATATGCGTGTTGGTACTCTGCCAAAAAAAAGGAGGACA
GCATTTCTTTCCTGATAAACTTTCATAATTATCTCTAAGCCTTAATATGA
CGAAGTTCTTTTTTCTAATTTTTATTTATCATTTTATTTCTCTGCATTCC
TTTTTTCCATTTATTTTTTATTAGATATTTTCTTTATATACATTTCAAAA
TTTTTATCCCGAATGTTATCTATACCATCCCTCCGTCCTGCTCCCCTACC
TACCCACTCCCGCTTCTTGCCCCTGTTAAATTTTTTTGCCTTTACATTTT
TATCCTATTGTCTTATATATCTTGATTATGTGTTTCTTCCTCACCTAGTG
AATCTCCCCTTTATTTTATCATTCAAATTCTATTCTTCTTTCTGTTTTCT
TTGTCTCCTTTTTCTTTTCTCAGAATGTAATAATTTTCTCTTTCCTTTTC
GTTTTACTCATTTTGTATATTTTAATATTTTTTTTGGTTCTAATATTTAC
CCTGTGATTATATTTGAATAAAATTCATCCTATATTTTTGCCGTATTTTA
TTTAATTGAAAATATTTTTTCTTTAATTTGGTTTGGTAAATGGGTCCCTC
GTTCTCCTTTTACATTTGTCGGGTTTTACATTCTGGTTTTTAATCTTGAA
AAATATTTTTATTTTTATCTTTTGGAATTTTTCTGTTGATACTCCTTGAT
ATTTGGAATATTTTATTTTTATTCTGTCCATGGGTGTCTATATGTGATTA
TTCTTTTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_f11.b1 MSMg01no093_f11.b1 CHROMAT_FILE:
MSMg01no093_f11.b1 PHD_FILE: MSMg01no093_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:50 2005
         (320 letters)



>mm_chr5_14153646_14154365
          Length = 720

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatattccagattaaaaagtagattatagacccctgttacacgtaatctcagtttattca 60
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 201 aatattccagattaaaaagtagattatagaaaactgttacacgtaatctcagtttattca 260

                                                                       
Query: 61  acccaacacatagctaatcagactacttctgtttattcttcctttcatgattatgctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccaacacatagctaatcagactacttctgtttattcttcctttcatgattatgctttc 320

                                                                       
Query: 121 aggtttcccttaaatctccaaactattattattattattattattattattattattatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtttcccttaaatctccaaactattattattattattattattattattattattatt 380

                                                                       
Query: 181 gttgcagaacattccctggtcttttcttatccttctgtataattttgattcctatactga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgcagaacattccctggtcttttcttatccttctgtataattttgattcctatactga 440

                                                                       
Query: 241 attatgattgactatgtactggtcaatctacatgctaaaatggctcatacatgaaggtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatgattgactatgtactggtcaatctacatgctaaaatggctcatacatgaaggtcc 500

                              
Query: 301 tgattaggtccatctatga 319
           |||||||||||||||||||
Sbjct: 501 tgattaggtccatctatga 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no093_f11.g1 MSMg01no093_f11.g1 CHROMAT_FILE:
MSMg01no093_f11.g1 PHD_FILE: MSMg01no093_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:50 2005
         (377 letters)



>mm_chr5_14242841_14243617
          Length = 777

 Score =  659 bits (341), Expect = 0.0
 Identities = 368/377 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatatcagtagctatatatgtgagggaaattagcatgtaattgggaaggaggtaggca 60
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 577 tatatatcagtagctatatatgtgagggaaattagcatgcagttgggaaggaggtaggca 518

                                                                       
Query: 61  aaatcagcaagatgggaaagaagctccgagttgaacactgatggatgcaccgatggatgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 517 aaatcagcaagatgggaaagaagctccgagttgaacactgatggatgcactgatggatgc 458

                                                                       
Query: 121 actatgtcggaacgacttccaaatgaggcagattacattgagttccaaatgagaaccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 actatgtcggaacgacttccaaatgaggcagattacattgagttccaaatgagaaccaga 398

                                                                       
Query: 181 gctcccagagtgaagaagtctcctgatgaaagaattacttctgtcttctgaaaccttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gctcccagagtgaagaagtctcctgatgaaagaattacttctgtcttctgaaaccttctg 338

                                                                       
Query: 241 actgcagcaactgtggactattcccaggtcccctcctgccaagtgttatgatggaattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actgcagcaactgtggactattcccaggtcccctcctgccaagtgttatgatggaattta 278

                                                                       
Query: 301 caaagcattttatctcacatttggtatttgtaaatgtattggcaatgggtaaacagctta 360
           |||||||||||||||||||||||| |  || ||||||||||||||||||||||||| |||
Sbjct: 277 caaagcattttatctcacatttgggaagtggaaatgtattggcaatgggtaaacagttta 218

                            
Query: 361 attcggtgcggtatgct 377
           |||||||| ||||||||
Sbjct: 217 attcggtgtggtatgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)