BAC Information

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BAC

Clone NameMSMg01-093N03
Chromosome5 (Build37)
Map Location 88,307,165 - 88,307,365
singlet/doubletsinglet
Overlap genenone
Upstream geneUgt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494
Downstream geneOdam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093N03.T7 (MSMg01no093_n03.b1)MSMg01-093N03.TJ (MSMg01no093_n03.g1)
ACCAG311158AG311159
length1,1491,265
length of high quality
(start - end)
203 (56 - 258)199 (115 - 313)
definitionCHROMAT_FILE: MSMg01no093_n03.b1 PHD_FILE: MSMg01no093_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:00 2005CHROMAT_FILE: MSMg01no093_n03.g1 PHD_FILE: MSMg01no093_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTAAAGGGCCCGTTTGGCTGTTATATTTATGACTATACCCTTAAACAG
CCCTAATTTTAAATGCGTTTTCAAAAATATTTTGGCTTTCCATGCTCTAT
TCTTCCATATGTACATGTGGATCTCTGACATGTAGACCATTCATTCTCCT
ATAAAACTTCACACTCAGTACCTTTCTGAATGATGATGCTAACTAGGGCA
TCATTGTTTATCTAACACATGGACTCTGTCAAGTCCTGTGCGAATGTTGT
ATTTATCCTTATTAGTTGCACTGCTCATCACATATCTAAGCCATATTTAT
ATATGATTTGATGATCTCATTTTCATGTGTTTTTTCTCACAGTTATTAAT
TTTAAAAAGTCTTACTGTATTTATGCCCATGAGTTTTAGCGCCCTAGTCT
TGACTGATATCTATCTCTTAAATCCTGTTTCGTATTTCATATTACATATT
CACTTGTGCTCTGACTCCGTACGTTACTCTTTTACTGATCATATGCTTTT
ATGTCTATTGTCTCTTCCATTGTCTTCGTCTACACCCCTTATCCCTGTTT
CTTATGCCTCTGTTTTTCTTATTTAACCTTTGATCTTCTTTTCTTTTTTT
CTTCACTATACTTTTCCCTAATTATCTTTCTTTCTCTTTTTTTTTTTTAT
CTTTTATTCTTTTTTCACTTCCTATTCTCTTTTTTCTTTTTTCTCCTTTT
TCTTTTTTCATATCTCATTATTACTCCTCTTTCTTATTTTTTTTTTTTCT
TTTTTCTTCAATTCCTTATTTTTTATTCTATTTTTTTTTTTTTTTTTTCT
TTTTTTTTCTTTATTCCCCCCTTTTTCTCTTTTTTCTTCTATTTCTTCTT
TATTTTTTTTTCTCTTCCCTCAATTATTATATTTTATTTATCTTATTTAC
TTTTTTTCTATTCATCTCTTTTGCTTTTATTATTCTTATTATTCTTTTTT
CTTTCTCTCTATTACTTTTATTTCCCCTTTCTTTCTTTATTTTTACTTCT
TCTACTATATCTTTCTCCTTTAATATCCTTTTACTCTTCATTTTCCTACT
TTTTCTTTCTCACACTTTTTTGTATATCTTCTTATCTTTATTTTCTTCNA
TTTTTATTCCTTTTTTCTATTCCTATTTCCATTCTCTATTCTCTCTTCT
TTCATGTGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTGAAAATTAATTATCTTTTCCTTTTGTCTACT
TTACCCTTTGACCACTAAGAAAGCAATTTCCAAATATGACAAGACAAGAT
GCAAGAAGACAAAGCAAAAGCCCTCTTGGAGGCCTGCTAATTTTTGAAGG
GAAACAGAGGAGAGGAGAACTAAGGGGAAGGGAAGTAGGAAGAGTAGAGG
GAGGGGACCTGTGGTAGGGCTAAACTGTATGAGAGACGAATCCTGTTTTC
AATTTTAAAAATAGGTTAAAAACTCTATTTATTTACAGTTTAGAAGATAT
AAATTTGCATCAAGAAGTCCCTAACTATTACTTGTGTTACACCATATTTC
TAGAGTATAGGTAGTCATTTTATACCCATAACTATCTTACCAGCTATTTT
TTTCCCCCCCCCCCCTCTAATCCTAGCACTTGCCAAAAAAGTGGAAGAAT
AAGAAATTCACTGCTCTTAACCTGTGCTTAATGTGCCTCAGACAACATGA
ACTTCATTATCTTTATGCTTATTACCACTTTTAACGCGAAAACCACGGAT
AACTTTATTTTCAGTAACTATCTCAAGACCCACTATTCCGTCTCTTTAGG
ATGCTATCTGGATTTACTGTGAAAGTACACTTATTAGTTCAGTTTATGTA
CTACATCTTATTTGCAATTCCTTCAATCTTAGCTCATAATTTGATTTTCT
CACTTCAATCAATTCAACCTCAAAATCTTCCCAACGTGACTTCATATTCG
TTTGTAGTCTATCTCTTCTTATAAACTACTCTTATGATTTTAAACCACCC
CTGTATCCTTTCTTTCCTAATCCTAATCTTGTCTTTTTATTTTGTTGCTA
AATCCATTACCTTCTCTAATTTATCCATCTAATTGATTCTACTCTCTCTA
TTTATTCATATAATACTCTGTCTTATCTACTCTTCTTCCATAATCTATTT
TTTCCTTTCCTTCTTATTCACATCACCTTCTCTCTCTTCTTTTTCTTCCT
TACTTTTTACCCTAATTTTCTCTCTCTTCCTTTCTCTTTCTATCTATTAT
CACCTTCCCTAACTCCCTCTTGACCTCCTTTCTCTTTTACTCCCCTACAT
CATCNCTCTCCACCTTTTCTCATCCTCATATCCTCCTCTTCTCATCTTTT
TACTATATACTTCTTCCTACTTATTACCTCCTTTCTATCATTTCTCTTCT
TTATCTATGTCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_n03.b1 MSMg01no093_n03.b1 CHROMAT_FILE:
MSMg01no093_n03.b1 PHD_FILE: MSMg01no093_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:00 2005
         (203 letters)



>mm_chr5_88306965_88307567
          Length = 603

 Score =  381 bits (197), Expect = e-110
 Identities = 200/201 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttaaatgcgttttcaaaaatattttggctttccatgctctattcttccatatgtaca 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 attttaaatgtgttttcaaaaatattttggctttccatgctctattcttccatatgtaca 342

                                                                       
Query: 61  tgtggatctctgacatgtagaccattcattctcctataaaacttcacactcagtaccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgtggatctctgacatgtagaccattcattctcctataaaacttcacactcagtaccttt 282

                                                                       
Query: 121 ctgaatgatgatgctaactagggcatcattgtttatctaacacatggactctgtcaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctgaatgatgatgctaactagggcatcattgtttatctaacacatggactctgtcaagtc 222

                                
Query: 181 ctgtgcgaatgttgtatttat 201
           |||||||||||||||||||||
Sbjct: 221 ctgtgcgaatgttgtatttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)