BAC Information

Click to search

BAC

Clone NameMSMg01-094A21
Chromosome5 (Build37)
Map Location 62,288,288 - 62,288,535
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666597, EG666610, LOC100041524, G6pd2
Downstream geneLOC100041543, Centd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094A21.T7 (MSMg01no094_a21.b1)MSMg01-094A21.TJ (MSMg01no094_a21.g1)
ACCAG311333AG311334
length758678
length of high quality
(start - end)
252 (106 - 357)536 (55 - 590)
definitionCHROMAT_FILE: MSMg01no094_a21.b1 PHD_FILE: MSMg01no094_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:32 2005CHROMAT_FILE: MSMg01no094_a21.g1 PHD_FILE: MSMg01no094_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGGTGGNGGGGNNNTNGGGGGGGGGGGNGGGGGNNNNNNNNAATTAA
AGACCNGATGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACCAAAATTCTCATAAGTTTGCATCATTACACCTT
TATTCCAACTAGTCACAAAAGTCCAGCTCTGCTGAAAAATACAACTCAGC
ATTTCAAAGGCCTATAAGAAGGAGAGAAGATGGTCACTGTATTCTAAGTC
AAAGATTTAAAGACAACTGTGTCAGCAGATATACCTAAGCATGATCATAT
CCTCATGGCAACTTTGTACAAAATCATTCCACTGTAAGCAATTTCTTGAA
GACCATACAGTAAACAATAGGAGGGCATTACGATAATAATTGAGTTGTTA
ACGAGGACAAGCAGAAGATGTTTTTTGTGTCCCACCCGATGCCGACCTCC
TTGTGATGACAGAGAAATTTAAAGCTCACCTGTGAGAAAAAGGGGGAGGG
GGGCTTGGCGCGCGCCTAACCCCTCTCCACCCTCCCCCCCTCCCATCCCT
CCTCATCATCCCCCTCCCCCCCCACACTAATTCCAACTCCCCACAGCCTA
ATTCCCACCTTCCCCCCATTCCCCCCCTTCCCCCCCCCCCCCCTTCCCCC
CTTTATCCCCTTTCCCCCCCTTCTACTCCCCCTTCTTTTTTTGCCCGTTT
CCCCTTCAATTTTTCCCATCCCCTTCATCCATCCCCTGCGTGCCCCCAAA
AATTAACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATAAAATATTAAACTAGAAGCTATAATATATATGTAAAGGACCAA
AACTATAAAAAATATGAAGAAAATAAGAATATGATAAAACTATAAAATAA
AATTTTAAAAAGTTTTGATGTGAAAATTTGCGACAAGAAACCTTCAACGA
TGCCATTGAAATCACTTGTTTCTTAGCCATCTACTGCTGAGCATACAGCA
TACCATTAGGAGTAACGGCTTTCTCTAGGAGGATTCCCTTGAAAAAATTA
AATTTTCATTTGTAAGGGGATATAAATTAGTGTTAACATCAGGGTTAGAG
ATGCAGGCACATGTCCACTTCTCCTTTCATCTATAGGATTCTAGCTGATG
CAGACCTGTGAAGACCCTTTGCATGCTGTCTCAGTCTCAGAGAATTCATA
CATGTATTGAACCTGTTGATGCAGAGGATCTTGTTTTCTCAGTGTCCACT
GACTCTACTCTCTCCTCCTCTCTTTCTGCCTCTTCCTTTGTATCGGTTCT
CTCAGTCCAGATGGAAGTTATTTGACAGATACATGTACAAATAACCACAG
TAACAACAAATACAAATAGATTGGCATTTCAAATAGAATGAAAACCTAGT
GTGATATTCTCTAATACACTGACATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_a21.b1 MSMg01no094_a21.b1 CHROMAT_FILE:
MSMg01no094_a21.b1 PHD_FILE: MSMg01no094_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:32 2005
         (252 letters)



>mm_chr5_62288084_62288735
          Length = 652

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccaaaattctcataagtttgcatcattacacctttattccaactagtcacaaa 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 452 gaattcaccaaaattctcataagtttgcatcattacgcctttattccaactagtcacaaa 393

                                                                       
Query: 65  agtccagctctgctgaaaaatacaactcagcatttcaaaggcctataagaaggagagaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agtccagctctgctgaaaaatacaactcagcatttcaaaggcctataagaaggagagaag 333

                                                                       
Query: 125 atggtcactgtattctaagtcaaagatttaaagacaactgtgtcagcagatatacctaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atggtcactgtattctaagtcaaagatttaaagacaactgtgtcagcagatatacctaag 273

                                                                       
Query: 185 catgatcatatcctcatggcaactttgtacaaaatcattccactgtaagcaatttcttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 catgatcatatcctcatggcaactttgtacaaaatcattccactgtaagcaatttcttga 213

                   
Query: 245 agaccata 252
           ||||||||
Sbjct: 212 agaccata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)